Non-Coding RNA Search

Tra1-TCH01F120031

Sequence:


               
               TTACGTGTTACAGGGAGTTGGGGGTCTAAGGAAGATTCTGGTGACCCCCCAGTCACCCAG
GATCCTGGCTGCAAGGGGCTCTTTAAGCATCTCACCTGTGAGGTGGGGCTGGTAGAGAAT
TAATTTCCTGTGCTATTTTAATTTTGCTGTATTTAATTCGCTGTTTATTTTAATTAATTA
ACGGCGGGTAATCATCTATGTAGCTTGCTGCGGCGGCTCCTCTGTCTTTTCAGAGGGCCA
GGCCAGGTGTTTGCCAGGTAGCCGTGGGGGGACGGGAGGGCCTTGGGGCATGACCCTCTC
CCCCTTTGCCGCTTTCAACCCAGGGCCTTCCCCACTCTCCTTGGCTCTCCTCCTAAGGGG
CGTTCTTCCCGTCGCTTCCCCCCCCACACCTGTGGTCCCTCCTGCTTCCTCCTCTCCGCC
AGGTCTGCCTTGGGGCCTCAGATGCAGCAACCTGGTGAAGAGAGGCTGACACGAAGCCCC
TGCCTGTGCCCCTAAGTAACGGTTTTAATGTCATAGGTGATGAATTAAAGGACAGGGAGC
TTGGCTGGCAACCTAAGCAGTGCTTCAGGCTGTTGGGGAAACGTATCAAGTAGGCGTCAG
TGTTAAATGGCAGCTCCGATCCCCACCTCAGTGCCCAAACAGCACATGTCCATGTGGTCG
GGCCAATGGGACACTAGCACATCCAAGCACCTGAGGACACATCCGTGGGTGTGATTAAAC
CTCTAGGACAGACTTCCAAGGGAGGGTTATCCGCCCCGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACGTGTTACAGGGAGTTGGGGGTCTAAGGAAGATTCTGGTGACCCCCCAGTCACCCAG
GATCCTGGCTGCAAGGGGCTCTTTAAGCATCTCACCTGTGAGGTGGGGCTGGTAGAGAAT
TAATTTCCTGTGCTATTTTAATTTTGCTGTATTTAATTCGCTGTTTATTTTAATTAATTA
ACGGCGGGTAATCATCTATGTAGCTTGCTGCGGCGGCTCCTCTGTCTTTTCAGAGGGCCA
GGCCAGGTGTTTGCCAGGTAGCCGTGGGGGGACGGGAGGGCCTTGGGGCATGACCCTCTC
CCCCTTTGCCGCTTTCAACCCAGGGCCTTCCCCACTCTCCTTGGCTCTCCTCCTAAGGGG
CGTTCTTCCCGTCGCTTCCCCCCCCACACCTGTGGTCCCTCCTGCTTCCTCCTCTCCGCC
AGGTCTGCCTTGGGGCCTCAGATGCAGCAACCTGGTGAAGAGAGGCTGACACGAAGCCCC
TGCCTGTGCCCCTAAGTAACGGTTTTAATGTCATAGGTGATGAATTAAAGGACAGGGAGC
TTGGCTGGCAACCTAAGCAGTGCTTCAGGCTGTTGGGGAAACGTATCAAGTAGGCGTCAG
TGTTAAATGGCAGCTCCGATCCCCACCTCAGTGCCCAAACAGCACATGTCCATGTGGTCG
GGCCAATGGGACACTAGCACATCCAAGCACCTGAGGACACATCCGTGGGTGTGATTAAAC
CTCTAGGACAGACTTCCAAGGGAGGGTTATCCGCCCCGCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               215-324, + strand, RNAz p=0.605538

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-324, + strand, RNAz p=0.605538

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-752, gnl|bosTau2|chr2 (78965508-78966279)
               

               
               5-752, gnl|Hg17|chr1 (27597333-27596570)
               

               
               5-752, gnl|Mm7|chr4 (132407658-132408357)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-752, gnl|bosTau2|chr2 (78965508-78966279)
               

               
               5-752, gnl|Hg17|chr1 (27597333-27596570)
               

               
               5-752, gnl|Mm7|chr4 (132407658-132408357)

	5-752, gnl\|bosTau2\|chr2 (78965508-78966279)
	5-752, gnl\|Hg17\|chr1 (27597333-27596570)
	5-752, gnl\|Mm7\|chr4 (132407658-132408357)