Tra1-TCH01G020095
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACGCACGCACGTCAAGGTTCTGCTGCTCTGAGCTGCGGAGGCTGCGGGTTTGGTCTTC GGCGGCTGCGGGTTTGGTCTTCGGCGGCTGCTTTGGCTGCGGCCCGGCCCGCGGCTGGAG TTTGGAGAGAAATCCAGGTACTCAGTTGACCCACCCTTTCTGCTGCCATGGGGGAGCTTT TCCGGAGTGAGGAGATGACGCTGGCCCAGCTTTTTCTCCAGTCAGAAGCTGCTTATTGTT GTGTCAGTGAATTAGGAGAACTCGGAAAGGTTCAGTTTCGTGATTTAAATCCAGATGTGA ATGTTTTCCAGCGGAAATTTGTGAATGAGGTTAGAAGATGTGAAGAAATGGATCGAAAGC TCCGATTTGTTGAGAAAGAGATAAGGAAAGCTAATATCCCAATTATGGACACTGGCGAAA ACCCAGAGGTGCCCTTCCCCCGGGACATGATTGACTTAGAGGCCAATTTTGAGAAGATTG AAAATGAACTGAAGGAAATCAACACAAATCAGGAAGCTCTGAAGAGAAACTTCCTGGAAC TGACTGAATTAAAATTTATACTTCGCAAAACTCAGCAGTTTTTCGATGAGATGGCGGATC CAGACCTGTTGGAAGAGTCGTCCTCCCTCCTGGAGCCAAACGAGATGGGAAGAGGCACGC CTTTAAGACTCGGCTTCGTGGCTGGTGTGATTAACCGCGAGCGCATCCCTACTTTTGAGC GCATGCTTTGGCGGGTGTGCCGGGGGAATGTGTTCCTGCGGCAGGCTGAAATCGAGAACC CCCTGGAGGATCCTGTGACTGGAGACTACGTGCACAAGTCTGTGTTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACGCACGCACGTCAAGGTTCTGCTGCTCTGAGCTGCGGAGGCTGCGGGTTTGGTCTTC GGCGGCTGCGGGTTTGGTCTTCGGCGGCTGCTTTGGCTGCGGCCCGGCCCGCGGCTGGAG TTTGGAGAGAAATCCAGGTACTCAGTTGACCCACCCTTTCTGCTGCCATGGGGGAGCTTT TCCGGAGTGAGGAGATGACGCTGGCCCAGCTTTTTCTCCAGTCAGAAGCTGCTTATTGTT GTGTCAGTGAATTAGGAGAACTCGGAAAGGTTCAGTTTCGTGATTTAAATCCAGATGTGA ATGTTTTCCAGCGGAAATTTGTGAATGAGGTTAGAAGATGTGAAGAAATGGATCGAAAGC TCCGATTTGTTGAGAAAGAGATAAGGAAAGCTAATATCCCAATTATGGACACTGGCGAAA ACCCAGAGGTGCCCTTCCCCCGGGACATGATTGACTTAGAGGCCAATTTTGAGAAGATTG AAAATGAACTGAAGGAAATCAACACAAATCAGGAAGCTCTGAAGAGAAACTTCCTGGAAC TGACTGAATTAAAATTTATACTTCGCAAAACTCAGCAGTTTTTCGATGAGATGGCGGATC CAGACCTGTTGGAAGAGTCGTCCTCCCTCCTGGAGCCAAACGAGATGGGAAGAGGCACGC CTTTAAGACTCGGCTTCGTGGCTGGTGTGATTAACCGCGAGCGCATCCCTACTTTTGAGC GCATGCTTTGGCGGGTGTGCCGGGGGAATGTGTTCCTGCGGCAGGCTGAAATCGAGAACC CCCTGGAGGATCCTGTGACTGGAGACTACGTGCACAAGTCTGTGTTCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 457-590, - strand, RNAz p=0.939664 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 457-590, - strand, RNAz p=0.939664 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 119-288, gnl|bosTau2|chr19 (36487928-36488097) | |
| 119-288, gnl|Hg17|chr17 (37866390-37866559) | |
| 119-288, gnl|Mm7|chr11 (101120833-101120980) | |
| 457-590, gnl|bosTau2|chr19 (38886187-38886054) | |
| 457-590, gnl|canFam2|chr9 (23783687-23783548) | |
| 457-590, gnl|danRer3|chr24 (5355867-5355728) | |
| 457-590, gnl|dasNov1|scaffold_4926 (11378-11517) | |
| 457-590, gnl|echTel1|scaffold_320753 (2017-2160) | |
| 457-590, gnl|fr1|chrUn (208877415-208877280) | |
| 457-590, gnl|galGal2|chr27_random (243676-243537) | |
| 457-590, gnl|hg17|chr17 (37875633-37875772) | |
| 457-590, gnl|Hg17|chr17 (37875632-37875762) | |
| 457-590, gnl|loxAfr1|scaffold_19184 (33705-33566) | |
| 457-590, gnl|mm7|chr11 (101130092-101130231) | |
| 457-590, gnl|Mm7|chr11 (101130088-101130221) | |
| 457-590, gnl|monDom2|scaffold_18 (52903687-52903826) | |
| 457-590, gnl|oryCun1|scaffold_207411 (3741-3866) | |
| 457-590, gnl|panTro1|chr19 (41077160-41077299) | |
| 457-590, gnl|rheMac2|chr16 (52599200-52599339) | |
| 457-590, gnl|rn3|chr10 (89973517-89973656) | |
| 457-590, gnl|tetNig1|chr3 (12583751-12583616) | |
| 457-590, gnl|xenTro1|scaffold_1084 (99793-99658) | |
| 673-801, gnl|bosTau2|chr19 (38880005-38879877) | |
| 673-801, gnl|canFam2|chr26 (8956839-8956686) | |
| 673-801, gnl|canFam2|chr9 (23776971-23776817) | |
| 673-801, gnl|danRer3|chr24 (5353576-5353428) | |
| 673-801, gnl|danRer3|chr5 (14556092-14555955) | |
| 673-801, gnl|dasNov1|scaffold_4926 (18603-18756) | |
| 673-801, gnl|dasNov1|scaffold_83862 (7707-7860) | |
| 673-801, gnl|echTel1|scaffold_311032 (61107-60953) | |
| 673-801, gnl|echTel1|scaffold_323594 (314347-314220) | |
| 673-801, gnl|fr1|chrUn (208876387-208876245) | |
| 673-801, gnl|fr1|chrUn (2003675-2003805) | |
| 673-801, gnl|galGal2|chr15 (4887876-4887730) | |
| 673-801, gnl|galGal2|chr27_random (238204-238057) | |
| 673-801, gnl|hg17|chr12 (122737209-122737362) | |
| 673-801, gnl|hg17|chr17 (37883987-37884140) | |
| 673-801, gnl|Hg17|chr17 (37884006-37884134) | |
| 673-801, gnl|loxAfr1|scaffold_19184 (27284-27131) | |
| 673-801, gnl|loxAfr1|scaffold_19184 (27265-27120) | |
| 673-801, gnl|mm7|chr11 (101136286-101136439) | |
| 673-801, gnl|Mm7|chr11 (101136305-101136433) | |
| 673-801, gnl|mm7|chr5 (123887904-123888045) | |
| 673-801, gnl|monDom2|scaffold_18 (52910448-52910605) | |
| 673-801, gnl|monDom2|scaffold_97 (4223681-4223821) | |
| 673-801, gnl|oryCun1|scaffold_158405 (8297-8144) | |
| 673-801, gnl|oryCun1|scaffold_193456 (56924-57077) | |
| 673-801, gnl|panTro1|chr10 (125792396-125792549) | |
| 673-801, gnl|panTro1|chr19 (41085529-41085682) | |
| 673-801, gnl|rheMac2|chr11 (125027353-125027506) | |
| 673-801, gnl|rheMac2|chr16 (52607277-52607430) | |
| 673-801, gnl|rn3|chr10 (89980899-89981052) | |
| 673-801, gnl|rn3|chr12 (32944242-32944100) | |
| 673-801, gnl|tetNig1|chr12 (6579575-6579731) | |
| 673-801, gnl|tetNig1|chr3 (12583000-12582866) | |
| 673-801, gnl|xenTro1|scaffold_100 (2292939-2293073) | |
| 673-801, gnl|xenTro1|scaffold_1084 (92316-92170) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-288, gnl|bosTau2|chr19 (36487928-36488097) | |
| 119-288, gnl|Hg17|chr17 (37866390-37866559) | |
| 119-288, gnl|Mm7|chr11 (101120833-101120980) | |
| 457-590, gnl|bosTau2|chr19 (38886187-38886054) | |
| 457-590, gnl|canFam2|chr9 (23783687-23783548) | |
| 457-590, gnl|danRer3|chr24 (5355867-5355728) | |
| 457-590, gnl|dasNov1|scaffold_4926 (11378-11517) | |
| 457-590, gnl|echTel1|scaffold_320753 (2017-2160) | |
| 457-590, gnl|fr1|chrUn (208877415-208877280) | |
| 457-590, gnl|galGal2|chr27_random (243676-243537) | |
| 457-590, gnl|hg17|chr17 (37875633-37875772) | |
| 457-590, gnl|Hg17|chr17 (37875632-37875762) | |
| 457-590, gnl|loxAfr1|scaffold_19184 (33705-33566) | |
| 457-590, gnl|mm7|chr11 (101130092-101130231) | |
| 457-590, gnl|Mm7|chr11 (101130088-101130221) | |
| 457-590, gnl|monDom2|scaffold_18 (52903687-52903826) | |
| 457-590, gnl|oryCun1|scaffold_207411 (3741-3866) | |
| 457-590, gnl|panTro1|chr19 (41077160-41077299) | |
| 457-590, gnl|rheMac2|chr16 (52599200-52599339) | |
| 457-590, gnl|rn3|chr10 (89973517-89973656) | |
| 457-590, gnl|tetNig1|chr3 (12583751-12583616) | |
| 457-590, gnl|xenTro1|scaffold_1084 (99793-99658) | |
| 673-801, gnl|bosTau2|chr19 (38880005-38879877) | |
| 673-801, gnl|canFam2|chr26 (8956839-8956686) | |
| 673-801, gnl|canFam2|chr9 (23776971-23776817) | |
| 673-801, gnl|danRer3|chr24 (5353576-5353428) | |
| 673-801, gnl|danRer3|chr5 (14556092-14555955) | |
| 673-801, gnl|dasNov1|scaffold_4926 (18603-18756) | |
| 673-801, gnl|dasNov1|scaffold_83862 (7707-7860) | |
| 673-801, gnl|echTel1|scaffold_311032 (61107-60953) | |
| 673-801, gnl|echTel1|scaffold_323594 (314347-314220) | |
| 673-801, gnl|fr1|chrUn (208876387-208876245) | |
| 673-801, gnl|fr1|chrUn (2003675-2003805) | |
| 673-801, gnl|galGal2|chr15 (4887876-4887730) | |
| 673-801, gnl|galGal2|chr27_random (238204-238057) | |
| 673-801, gnl|hg17|chr12 (122737209-122737362) | |
| 673-801, gnl|hg17|chr17 (37883987-37884140) | |
| 673-801, gnl|Hg17|chr17 (37884006-37884134) | |
| 673-801, gnl|loxAfr1|scaffold_19184 (27284-27131) | |
| 673-801, gnl|loxAfr1|scaffold_19184 (27265-27120) | |
| 673-801, gnl|mm7|chr11 (101136286-101136439) | |
| 673-801, gnl|Mm7|chr11 (101136305-101136433) | |
| 673-801, gnl|mm7|chr5 (123887904-123888045) | |
| 673-801, gnl|monDom2|scaffold_18 (52910448-52910605) | |
| 673-801, gnl|monDom2|scaffold_97 (4223681-4223821) | |
| 673-801, gnl|oryCun1|scaffold_158405 (8297-8144) | |
| 673-801, gnl|oryCun1|scaffold_193456 (56924-57077) | |
| 673-801, gnl|panTro1|chr10 (125792396-125792549) | |
| 673-801, gnl|panTro1|chr19 (41085529-41085682) | |
| 673-801, gnl|rheMac2|chr11 (125027353-125027506) | |
| 673-801, gnl|rheMac2|chr16 (52607277-52607430) | |
| 673-801, gnl|rn3|chr10 (89980899-89981052) | |
| 673-801, gnl|rn3|chr12 (32944242-32944100) | |
| 673-801, gnl|tetNig1|chr12 (6579575-6579731) | |
| 673-801, gnl|tetNig1|chr3 (12583000-12582866) | |
| 673-801, gnl|xenTro1|scaffold_100 (2292939-2293073) | |
| 673-801, gnl|xenTro1|scaffold_1084 (92316-92170) |