Non-Coding RNA Search

Tra1-TCH01G030013

Sequence:


               
               ATTGACGTCCCGCCCTGATGTGTGACTGAGGAAATGTAGGCTCAGAGAGGTCAAGCCGCT
TGCCCAAGGTCACACAGCAGAGAGGTAATGGAGCCTGAATCTTGATCCCTGGCTCCAAAC
CCAGATGCAGGATTAATTTTAAAATTGACAGGGTTCAGACAAAACCATTAGAGATTTGAC
ATCTGAAAAGAGTGGAAAACAGCTAAGGGTCTTTGCTGCTAGTAGGTTGAGAGGTTCTAG
GCTGAGAAGATGAGCCCTTGACTGAAGTGCAGATATGTTACGCCGAAGAAGAACATTAGT
CCTCACCGCCAAGTCAGCCTGCTCCTCCTGGCCCACGGCTCTGAAGGCTGGCACTTTAGT
TGAGGGGAAATTGAGTCACAGAGCTCCAGATTCATGGCAGAGTGATGCTAGGAGGAGCAC
TAGCAGGCCTGAAGGACACTTACAAAATGCGGCCGATCCGCGTTCTACCCTCTCATATCC
CATATCACACCTGACTTCTCCGATCCTCAGTCTCTCCACTTGTGAAATCTGGATAATGAT
CTCACCTAAGTCTGTGCCCATCGGGTGGCTTCAGTGGGAATGGAGAACACTTAGCATGGT
GCCTCGCACAGAGCTGTGGCCCCGGGCAATCCATTCAGCAAACGCTGGCCTCCTGCTCTT
TGCCAGGCACTCTGCTCAACACCAAGGGCACAATATTAAGCAAAGCAGATGCGGTCCCTG
CCTGCCTGGAACTTTCTGTGCAGCTCAGGCTATTGAACCTTTATCTATATTATAATAGCC
GTGAGCTTCAGCCCCAGTTCTGCCGCTCCCTGGCTGGGTGACCTTGAGTAACCTCTCTCA
GCCTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGACGTCCCGCCCTGATGTGTGACTGAGGAAATGTAGGCTCAGAGAGGTCAAGCCGCT
TGCCCAAGGTCACACAGCAGAGAGGTAATGGAGCCTGAATCTTGATCCCTGGCTCCAAAC
CCAGATGCAGGATTAATTTTAAAATTGACAGGGTTCAGACAAAACCATTAGAGATTTGAC
ATCTGAAAAGAGTGGAAAACAGCTAAGGGTCTTTGCTGCTAGTAGGTTGAGAGGTTCTAG
GCTGAGAAGATGAGCCCTTGACTGAAGTGCAGATATGTTACGCCGAAGAAGAACATTAGT
CCTCACCGCCAAGTCAGCCTGCTCCTCCTGGCCCACGGCTCTGAAGGCTGGCACTTTAGT
TGAGGGGAAATTGAGTCACAGAGCTCCAGATTCATGGCAGAGTGATGCTAGGAGGAGCAC
TAGCAGGCCTGAAGGACACTTACAAAATGCGGCCGATCCGCGTTCTACCCTCTCATATCC
CATATCACACCTGACTTCTCCGATCCTCAGTCTCTCCACTTGTGAAATCTGGATAATGAT
CTCACCTAAGTCTGTGCCCATCGGGTGGCTTCAGTGGGAATGGAGAACACTTAGCATGGT
GCCTCGCACAGAGCTGTGGCCCCGGGCAATCCATTCAGCAAACGCTGGCCTCCTGCTCTT
TGCCAGGCACTCTGCTCAACACCAAGGGCACAATATTAAGCAAAGCAGATGCGGTCCCTG
CCTGCCTGGAACTTTCTGTGCAGCTCAGGCTATTGAACCTTTATCTATATTATAATAGCC
GTGAGCTTCAGCCCCAGTTCTGCCGCTCCCTGGCTGGGTGACCTTGAGTAACCTCTCTCA
GCCTCTGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               219-338, - strand, RNAz p=0.623834
               

               
               560-718, - strand, RNAz p=0.993556
               

               
               577-846, - strand, RNAz p=0.841776

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-338, - strand, RNAz p=0.623834
               

               
               560-718, - strand, RNAz p=0.993556
               

               
               577-846, - strand, RNAz p=0.841776

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               141-846, gnl|bosTau2|chr17 (29525121-29524405)
               

               
               141-846, gnl|canFam2|chr26 (11959067-11959609)
               

               
               141-846, gnl|dasNov1|scaffold_28259 (11276-11770)
               

               
               141-846, gnl|hg17|chr12 (110173906-110174396)
               

               
               141-846, gnl|Hg17|chr12 (110174012-110174849)
               

               
               141-846, gnl|loxAfr1|scaffold_18215 (17321-17661)
               

               
               141-846, gnl|oryCun1|scaffold_214069 (184337-184735)
               

               
               141-846, gnl|panTro1|chr10 (112749583-112750071)
               

               
               141-846, gnl|rheMac2|chr11 (112211360-112211851)
               

               
               141-846, gnl|rn3|chr12 (35739373-35739778)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-846, gnl|bosTau2|chr17 (29525121-29524405)
               

               
               141-846, gnl|canFam2|chr26 (11959067-11959609)
               

               
               141-846, gnl|dasNov1|scaffold_28259 (11276-11770)
               

               
               141-846, gnl|hg17|chr12 (110173906-110174396)
               

               
               141-846, gnl|Hg17|chr12 (110174012-110174849)
               

               
               141-846, gnl|loxAfr1|scaffold_18215 (17321-17661)
               

               
               141-846, gnl|oryCun1|scaffold_214069 (184337-184735)
               

               
               141-846, gnl|panTro1|chr10 (112749583-112750071)
               

               
               141-846, gnl|rheMac2|chr11 (112211360-112211851)
               

               
               141-846, gnl|rn3|chr12 (35739373-35739778)

	219-338, - strand, RNAz p=0.623834
	560-718, - strand, RNAz p=0.993556
	577-846, - strand, RNAz p=0.841776

	141-846, gnl\|bosTau2\|chr17 (29525121-29524405)
	141-846, gnl\|canFam2\|chr26 (11959067-11959609)
	141-846, gnl\|dasNov1\|scaffold_28259 (11276-11770)
	141-846, gnl\|hg17\|chr12 (110173906-110174396)
	141-846, gnl\|Hg17\|chr12 (110174012-110174849)
	141-846, gnl\|loxAfr1\|scaffold_18215 (17321-17661)
	141-846, gnl\|oryCun1\|scaffold_214069 (184337-184735)
	141-846, gnl\|panTro1\|chr10 (112749583-112750071)
	141-846, gnl\|rheMac2\|chr11 (112211360-112211851)
	141-846, gnl\|rn3\|chr12 (35739373-35739778)