Non-Coding RNA Search

Tra1-TCH01G030015

Sequence:


               
               AATCCTTTCCTGCTTTCTTGTTCTCTCATAGGGGATGGTATGAATGCCTATGTGGCCTAC
AAAGTTACAACACAGGTGAGTCCAGGTGACCCTGCTGATGGCCACCTTAATAGACTTGGG
TGCTTATACCAAGAAGATCATCACTCAGATTATTTCTGGGTATTTCTTTAGTTTCTTTGC
CAACATCTTCCTTCAAGTTTACTCAAGATGGAACACGTCTGCATTCCCTTGGTAATTTCA
TCTGAGCCTTTCCACTTTCCTCCCAGAGAGCTAACACTTCAGTGTGAAACTTTGTAAGTT
TTATTAAGATATGTGGTGTATCTGATATAGTCCCATCCCTCTTAGGAGCTATGTGGCTTA
GAGCTAGTTTGGCGGATCTCCCCAAACTATATCACCTGTTTAAAAAACATCATTTCTTCT
CCAATTTCCTGTGTGGAGCTTCTTTTAATGCTTTCCCTACCCTTTTGCCCCTCGGGTCTG
GTCTTCCTTTTTTATATATTAATGCATACAAAACTTAGGTAATGTTGTATGCAGGTTATG
AAGCATAAAAAAATGAAGCCCCAAACCTATCACCAGTCTTAAGACGAGTACCATAGAATC
CACCTACATGTTTCTCCATGTTCTAAACCCTGCCTCACACCTTAGAGGTGAATACGCTCC
TGAGATGTCTCTCATTTCCCTTATAAAAAGTCCTCACATAAGTATCTCTAAACAGTATGC
TGTTTTGCTTTTTTTTTTTTTTTTTGAGTTTCATAAAAATGGTATCATGCTAAAAATAGT
GCTTTCTGTACTAGCGTTGTTCCTCAGAACCATCCATGTTTGTGTGTAGCTGTGGTTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCTTTCCTGCTTTCTTGTTCTCTCATAGGGGATGGTATGAATGCCTATGTGGCCTAC
AAAGTTACAACACAGGTGAGTCCAGGTGACCCTGCTGATGGCCACCTTAATAGACTTGGG
TGCTTATACCAAGAAGATCATCACTCAGATTATTTCTGGGTATTTCTTTAGTTTCTTTGC
CAACATCTTCCTTCAAGTTTACTCAAGATGGAACACGTCTGCATTCCCTTGGTAATTTCA
TCTGAGCCTTTCCACTTTCCTCCCAGAGAGCTAACACTTCAGTGTGAAACTTTGTAAGTT
TTATTAAGATATGTGGTGTATCTGATATAGTCCCATCCCTCTTAGGAGCTATGTGGCTTA
GAGCTAGTTTGGCGGATCTCCCCAAACTATATCACCTGTTTAAAAAACATCATTTCTTCT
CCAATTTCCTGTGTGGAGCTTCTTTTAATGCTTTCCCTACCCTTTTGCCCCTCGGGTCTG
GTCTTCCTTTTTTATATATTAATGCATACAAAACTTAGGTAATGTTGTATGCAGGTTATG
AAGCATAAAAAAATGAAGCCCCAAACCTATCACCAGTCTTAAGACGAGTACCATAGAATC
CACCTACATGTTTCTCCATGTTCTAAACCCTGCCTCACACCTTAGAGGTGAATACGCTCC
TGAGATGTCTCTCATTTCCCTTATAAAAAGTCCTCACATAAGTATCTCTAAACAGTATGC
TGTTTTGCTTTTTTTTTTTTTTTTTGAGTTTCATAAAAATGGTATCATGCTAAAAATAGT
GCTTTCTGTACTAGCGTTGTTCCTCAGAACCATCCATGTTTGTGTGTAGCTGTGGTTAGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               120-239, - strand, RNAz p=0.641983
               

               
               465-581, - strand, RNAz p=0.520483
               

               
               621-737, - strand, RNAz p=0.999601

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.641983
               

               
               465-581, - strand, RNAz p=0.520483
               

               
               621-737, - strand, RNAz p=0.999601

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               475-609, - strand, RNAmicro p=0.99959

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               475-609, - strand, RNAmicro p=0.99959

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-838, gnl|bosTau2|chr10 (30117582-30118415)
               

               
               1-838, gnl|Hg17|chr15 (62202727-62203856)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-838, gnl|bosTau2|chr10 (30117582-30118415)
               

               
               1-838, gnl|Hg17|chr15 (62202727-62203856)

	120-239, - strand, RNAz p=0.641983
	465-581, - strand, RNAz p=0.520483
	621-737, - strand, RNAz p=0.999601

	1-838, gnl\|bosTau2\|chr10 (30117582-30118415)
	1-838, gnl\|Hg17\|chr15 (62202727-62203856)