Non-Coding RNA Search

Tra1-TCH01G040001

Sequence:


               
               TGTTTCTTTAGCTTCTTCTCCAGCTTGTAAATACTGGGGAGAGTTTCGCTCGTTTGGGCT
CTTAGTGCTTTTCCACTGTTTGAGAGTCACATCCACGGCTGTTTTCTCCACCCCCTCCGT
GTTTGGGGTCTGAATAGACTGAGCTCCCGGTTCATACGTGTGCTTCAGAGGTATCCTGGC
CACGTTGCCCCTTAAAGCTCTAAGTAAAAATGACTTTACTCCGTGGCGCTATGTTAAATT
GGCTGGTTAATTCTGGTGTTATTTACCCTGTAATTCATTAGTTTCACCCCGCCATTGGCA
GCTGACAGGCTGTAATTTCACGCCTTGCAATAAAAGATGTCTCATAATCTGCTTCATTTA
GCAGCAAGAGAATTTAATGAAATTAACTGCGGTCCTAATTATGCCAGTGAATACTAAAGA
CCGCCATCAAGTTTTCTCAGAAAAAGGACGAGGTCCACCTCGTGAAGGATTGAGCGAATA
ATTTCCTGGGAAAAGTTGCAACTGTCTTCCTTCTATTGGCCGACGAGGGCCAATTACGAC
TACACGTATGACTACAATTAACCGTTTTTCCCTGAATGTCTCTCCACGTATTCGTCGTTT
CCCGTCAACTCCGAGAGTGGGTCCCCTCTTGGAGCGGTGGTGGTGGTGGTGGTGAGAAAA
CAAGCTGATGCGGAGGGTTCTCCATCTCGGGTCTTTCCTCCCGCGCTGGCCCGTGGTGTG
GGTTTGCCTCACGTCCCAGCCGGGTTCACAGCGCGTGGCCGGGAGAAAGTTCTCGAATGT
TCCATGACGACGCCCTCCTTCTGCTCTGAGGATGCCCGCCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTCTTTAGCTTCTTCTCCAGCTTGTAAATACTGGGGAGAGTTTCGCTCGTTTGGGCT
CTTAGTGCTTTTCCACTGTTTGAGAGTCACATCCACGGCTGTTTTCTCCACCCCCTCCGT
GTTTGGGGTCTGAATAGACTGAGCTCCCGGTTCATACGTGTGCTTCAGAGGTATCCTGGC
CACGTTGCCCCTTAAAGCTCTAAGTAAAAATGACTTTACTCCGTGGCGCTATGTTAAATT
GGCTGGTTAATTCTGGTGTTATTTACCCTGTAATTCATTAGTTTCACCCCGCCATTGGCA
GCTGACAGGCTGTAATTTCACGCCTTGCAATAAAAGATGTCTCATAATCTGCTTCATTTA
GCAGCAAGAGAATTTAATGAAATTAACTGCGGTCCTAATTATGCCAGTGAATACTAAAGA
CCGCCATCAAGTTTTCTCAGAAAAAGGACGAGGTCCACCTCGTGAAGGATTGAGCGAATA
ATTTCCTGGGAAAAGTTGCAACTGTCTTCCTTCTATTGGCCGACGAGGGCCAATTACGAC
TACACGTATGACTACAATTAACCGTTTTTCCCTGAATGTCTCTCCACGTATTCGTCGTTT
CCCGTCAACTCCGAGAGTGGGTCCCCTCTTGGAGCGGTGGTGGTGGTGGTGGTGAGAAAA
CAAGCTGATGCGGAGGGTTCTCCATCTCGGGTCTTTCCTCCCGCGCTGGCCCGTGGTGTG
GGTTTGCCTCACGTCCCAGCCGGGTTCACAGCGCGTGGCCGGGAGAAAGTTCTCGAATGT
TCCATGACGACGCCCTCCTTCTGCTCTGAGGATGCCCGCCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               290-409, - strand, RNAz p=0.957205

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               290-409, - strand, RNAz p=0.957205

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-816, gnl|bosTau2|chr3 (81969693-81970511)
               

               
               6-816, gnl|Hg17|chr2 (236539417-236540295)
               

               
               6-816, gnl|Mm7|chr1 (89604806-89605498)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-816, gnl|bosTau2|chr3 (81969693-81970511)
               

               
               6-816, gnl|Hg17|chr2 (236539417-236540295)
               

               
               6-816, gnl|Mm7|chr1 (89604806-89605498)

	6-816, gnl\|bosTau2\|chr3 (81969693-81970511)
	6-816, gnl\|Hg17\|chr2 (236539417-236540295)
	6-816, gnl\|Mm7\|chr1 (89604806-89605498)