Non-Coding RNA Search

Tra1-TCH01G040086

Sequence:


               
               TGTTTACTGGAACTGGGGATATCTTTGCCACTTGACAAGGGTCAAGTCAAAGGAGTAAAC
AGTGGACTTGGAATTGGAGGGTGACCCCCCCCTCCCCGCAGCATAACCATGAACAAGTTT
AAGTTTTTGTCCCCAAAGGTTCCCAAACTTGGTTTTACGTGAATGTTTCTGATATTTAAT
GTCTCCATGTGCTGAATCGAACAGCTCTGGTTTTGGAATTTGTGCCATGAAAAGCTCAGA
GTGAACAATGTGACAAGTCCTTAACTAGCTCTCTGTTCATTTCATGGACCAAAGGGGCCA
CTTGTATCTGCTCATAGGCCTGAGTCCAAGCTTCTGTTCACTGTCACCCTCTCGGCAGCC
AGCAGTGGACGATGGCCAAACATCATGTGACTTAAAAAAAAAAAAAAACCCCAAAAAACG
CCAAAACACTGTCCTGCTTTTAAGCACCCTTCATGGCTTGGATTGCAGGCCCCTCCAGGG
CAGTGAGTGCTTCTCTCTGCAGCTAGACTGAGCAGAGTGTGGGGACTAAACAGATGCTTC
AGAAAGGCTGCTGATTCTGTGGAATATGTCCTGTTGAGCACAGATTCCTGATTAAAGACA
AATGGAATAGAAAGATGTTCTCAGAATGAGCAAGGCACTGTAGGCAGGGAAATGCAGTGA
GATGCAAGACACATCTTTGTAGAATCGGGTTGTTGTGAAGAGCCCGAGGTTTAAGGTGGG
ATGGGGTTGTCTCTCGAGATATCACCACTTACTGATCGTGTGACCCCCGAGAAGACACTG
AACCATCGCCTCCTTCNTAATTGGCAGCACTGGTCCAGGCATCATAAGGTCACTGGCAGT
AAGTGGGGCCTTGTGTGTAATGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTACTGGAACTGGGGATATCTTTGCCACTTGACAAGGGTCAAGTCAAAGGAGTAAAC
AGTGGACTTGGAATTGGAGGGTGACCCCCCCCTCCCCGCAGCATAACCATGAACAAGTTT
AAGTTTTTGTCCCCAAAGGTTCCCAAACTTGGTTTTACGTGAATGTTTCTGATATTTAAT
GTCTCCATGTGCTGAATCGAACAGCTCTGGTTTTGGAATTTGTGCCATGAAAAGCTCAGA
GTGAACAATGTGACAAGTCCTTAACTAGCTCTCTGTTCATTTCATGGACCAAAGGGGCCA
CTTGTATCTGCTCATAGGCCTGAGTCCAAGCTTCTGTTCACTGTCACCCTCTCGGCAGCC
AGCAGTGGACGATGGCCAAACATCATGTGACTTAAAAAAAAAAAAAAACCCCAAAAAACG
CCAAAACACTGTCCTGCTTTTAAGCACCCTTCATGGCTTGGATTGCAGGCCCCTCCAGGG
CAGTGAGTGCTTCTCTCTGCAGCTAGACTGAGCAGAGTGTGGGGACTAAACAGATGCTTC
AGAAAGGCTGCTGATTCTGTGGAATATGTCCTGTTGAGCACAGATTCCTGATTAAAGACA
AATGGAATAGAAAGATGTTCTCAGAATGAGCAAGGCACTGTAGGCAGGGAAATGCAGTGA
GATGCAAGACACATCTTTGTAGAATCGGGTTGTTGTGAAGAGCCCGAGGTTTAAGGTGGG
ATGGGGTTGTCTCTCGAGATATCACCACTTACTGATCGTGTGACCCCCGAGAAGACACTG
AACCATCGCCTCCTTCNTAATTGGCAGCACTGGTCCAGGCATCATAAGGTCACTGGCAGT
AAGTGGGGCCTTGTGTGTAATGTGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               306-490, - strand, RNAz p=0.999133
               

               
               606-724, + strand, RNAz p=0.919777

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-490, - strand, RNAz p=0.999133
               

               
               606-724, + strand, RNAz p=0.919777

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-186, gnl|bosTau2|chr26 (10748395-10748573)
               

               
               1-186, gnl|Hg17|chr10 (97213477-97213278)
               

               
               1-186, gnl|Mm7|chr19 (40313886-40313726)
               


               
               187-865, gnl|bosTau2|chr26 (10748617-10749289)
               

               
               187-865, gnl|Hg17|chr10 (97213277-97212613)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr26 (10748395-10748573)
               

               
               1-186, gnl|Hg17|chr10 (97213477-97213278)
               

               
               1-186, gnl|Mm7|chr19 (40313886-40313726)
               


               
               187-865, gnl|bosTau2|chr26 (10748617-10749289)
               

               
               187-865, gnl|Hg17|chr10 (97213277-97212613)

	306-490, - strand, RNAz p=0.999133
	606-724, + strand, RNAz p=0.919777

	1-186, gnl\|bosTau2\|chr26 (10748395-10748573)
	1-186, gnl\|Hg17\|chr10 (97213477-97213278)
	1-186, gnl\|Mm7\|chr19 (40313886-40313726)

	187-865, gnl\|bosTau2\|chr26 (10748617-10749289)
	187-865, gnl\|Hg17\|chr10 (97213277-97212613)