Non-Coding RNA Search

Tra1-TCH01G060022

Sequence:


               
               TTTATGACATTTTTTAATGGTTTGGAGTTCCTGTTAATTCTATAGAGGAATTATGAATCT
TTTTTTTTTCCTAAATAGGTCAAAATATTTTAAAGAGTAAGAAAGGAGGATACCTATTGG
CAATAAGCATTTAGAAATATATCTTAGCAAGTTTAGAACTTAAATTTTTGTGAACAAAAA
CAGAAAAGAAAAACAGCAAGTGAAAAAAATGAGTAGGTGGGAGATATGCTGGCTTTAAAT
AAACTAGGAGAGCACATGTGGGTGTTTTTGTAAGTGAAGCTGACTACTTTCCTAGAATCT
CGGTTAAAAAGAGAATGGTACTTGAAAAAAATATATATGTGTGTATGGCAGTGCCAATTC
TTTGCTACTAAATCAGTGACTTAAAGCATCTGTTTCCCAAGCTGCTCTTGTGCCAGAGAG
CTGGAACTGAACTGTTCTGTGACAGAGCTCAGCATTAGACAAATCTTGCTGAAACCGATT
CATTGGAACAAAGAGCTCCCATAGGTTGAAGCCACAAGTATCTGTTTCCTTGTGCCGAGA
TACAGAATGTGCAAACGTCATGAAATGTAGAAGGATATGAAGTAGAAAGTGGAGCTCATT
GATGAGAAGAAATGTGACGTGTTTAGCACACATACCTAGGCTTCCTAACTCATGAGACCT
CATTATATAAAATATCCCCCCTTGAAATTTAAAAAAAAAATTGCGATGAACAGTCTCAGT
TGTAGGGAGGCTAATGCAAAAGAGGGTGAATGTAGTTCCAGATTAAACTAAAGGAGAACT
TCCCTTGATGCTCATAACATTTATTGGTGATTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATGACATTTTTTAATGGTTTGGAGTTCCTGTTAATTCTATAGAGGAATTATGAATCT
TTTTTTTTTCCTAAATAGGTCAAAATATTTTAAAGAGTAAGAAAGGAGGATACCTATTGG
CAATAAGCATTTAGAAATATATCTTAGCAAGTTTAGAACTTAAATTTTTGTGAACAAAAA
CAGAAAAGAAAAACAGCAAGTGAAAAAAATGAGTAGGTGGGAGATATGCTGGCTTTAAAT
AAACTAGGAGAGCACATGTGGGTGTTTTTGTAAGTGAAGCTGACTACTTTCCTAGAATCT
CGGTTAAAAAGAGAATGGTACTTGAAAAAAATATATATGTGTGTATGGCAGTGCCAATTC
TTTGCTACTAAATCAGTGACTTAAAGCATCTGTTTCCCAAGCTGCTCTTGTGCCAGAGAG
CTGGAACTGAACTGTTCTGTGACAGAGCTCAGCATTAGACAAATCTTGCTGAAACCGATT
CATTGGAACAAAGAGCTCCCATAGGTTGAAGCCACAAGTATCTGTTTCCTTGTGCCGAGA
TACAGAATGTGCAAACGTCATGAAATGTAGAAGGATATGAAGTAGAAAGTGGAGCTCATT
GATGAGAAGAAATGTGACGTGTTTAGCACACATACCTAGGCTTCCTAACTCATGAGACCT
CATTATATAAAATATCCCCCCTTGAAATTTAAAAAAAAAATTGCGATGAACAGTCTCAGT
TGTAGGGAGGCTAATGCAAAAGAGGGTGAATGTAGTTCCAGATTAAACTAAAGGAGAACT
TCCCTTGATGCTCATAACATTTATTGGTGATTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               383-499, - strand, RNAz p=0.998315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-499, - strand, RNAz p=0.998315

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-614, gnl|bosTau2|chr6 (57867251-57867849)
               

               
               1-614, gnl|Hg17|chr4 (86083202-86082490)
               

               
               1-614, gnl|Mm7|chr5 (101120779-101120029)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-614, gnl|bosTau2|chr6 (57867251-57867849)
               

               
               1-614, gnl|Hg17|chr4 (86083202-86082490)
               

               
               1-614, gnl|Mm7|chr5 (101120779-101120029)

	1-614, gnl\|bosTau2\|chr6 (57867251-57867849)
	1-614, gnl\|Hg17\|chr4 (86083202-86082490)
	1-614, gnl\|Mm7\|chr5 (101120779-101120029)