Non-Coding RNA Search

Tra1-TCH01G070001

Sequence:


               
               TTAAAAAGCATTAAGTTCCCTGATTTGTAGTTATTTTTAAAATACCTCACAGTTCCTGCA
CGTAACAAACTCAGTAAAGATTAAGTAGTTGAATAGGTCAGTCAGTAACAATAGCCATGT
CACTGCCATCAAGGTCTTAATATTTTAACATTGGAATTTAATATACAAGAATATAGCATC
TTGATTCATGTGTGTTAGACTTGTTGCTTTGGGCCCTTTATCCCTATAGGAAATAATTCA
CATTGTTCAGATCTCTAAAAACACTTCTCAAGGAGAATGTGACGTAATTGTCCAGTAGAG
ACTCATTTTCATCAAAATCACTATTTTGTTTTTGAGGCAGTGTGTAGTGTTTAACAGCAT
ATGAAGCCCAGAGAAAGATCTCTCTCTCAGTTCCTACTTCTGTCACCAATGTATTTTGCT
TACGTTCAGCAGTTTCCCCAGCCATAAAATAAGTAATACAGTGGGTGGAAAAATACACTT
AATTTCTAAGAAAAAAAGGTACACTTTGAATCTAGAGAATTCAGATGGATTCTGATAAAC
ATGAGGCTAGATTATAAGAAAGACAGGTGAAAACACTGGGCTAATTTTGATGTTTTCACA
CTTTTTATATTACTCGGTGTTTTCTGTCCCCACCCTACTGTGAACCATAGCGCCAGATGG
GGGCGGCATAGGTGGGACAAGGTGACGGGTGGAGGCTCATAGGCAGAGGCAGAGAGACCG
CACCCAGCTGGCTGGCAGATGCACGAGCTCGAGCGGGCCTGGTCTCCATCCCTGTGCACC
CCAGTGAGCCCATGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAAGCATTAAGTTCCCTGATTTGTAGTTATTTTTAAAATACCTCACAGTTCCTGCA
CGTAACAAACTCAGTAAAGATTAAGTAGTTGAATAGGTCAGTCAGTAACAATAGCCATGT
CACTGCCATCAAGGTCTTAATATTTTAACATTGGAATTTAATATACAAGAATATAGCATC
TTGATTCATGTGTGTTAGACTTGTTGCTTTGGGCCCTTTATCCCTATAGGAAATAATTCA
CATTGTTCAGATCTCTAAAAACACTTCTCAAGGAGAATGTGACGTAATTGTCCAGTAGAG
ACTCATTTTCATCAAAATCACTATTTTGTTTTTGAGGCAGTGTGTAGTGTTTAACAGCAT
ATGAAGCCCAGAGAAAGATCTCTCTCTCAGTTCCTACTTCTGTCACCAATGTATTTTGCT
TACGTTCAGCAGTTTCCCCAGCCATAAAATAAGTAATACAGTGGGTGGAAAAATACACTT
AATTTCTAAGAAAAAAAGGTACACTTTGAATCTAGAGAATTCAGATGGATTCTGATAAAC
ATGAGGCTAGATTATAAGAAAGACAGGTGAAAACACTGGGCTAATTTTGATGTTTTCACA
CTTTTTATATTACTCGGTGTTTTCTGTCCCCACCCTACTGTGAACCATAGCGCCAGATGG
GGGCGGCATAGGTGGGACAAGGTGACGGGTGGAGGCTCATAGGCAGAGGCAGAGAGACCG
CACCCAGCTGGCTGGCAGATGCACGAGCTCGAGCGGGCCTGGTCTCCATCCCTGTGCACC
CCAGTGAGCCCATGCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               327-435, - strand, RNAz p=0.870967

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               327-435, - strand, RNAz p=0.870967

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-642, gnl|bosTau2|chr6 (7205654-7205009)
               

               
               1-642, gnl|Hg17|chr4 (103893967-103894668)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-642, gnl|bosTau2|chr6 (7205654-7205009)
               

               
               1-642, gnl|Hg17|chr4 (103893967-103894668)

	1-642, gnl\|bosTau2\|chr6 (7205654-7205009)
	1-642, gnl\|Hg17\|chr4 (103893967-103894668)