Non-Coding RNA Search

Tra1-TCH01G080025

Sequence:


               
               GCGGGATTGAGACCAACTTTCCTTTTGAAAAGATACTCTTCTCTCCTTGGAATTCTGGAA
TACTTCAGCTGGTTCAAAGGAGTGGGTCTCTGACCTTAGCTCTTAGCTCAGATCTAGCAC
TGGACCCGCTCTTAGGAAAGGTAACTGAGTCGTAGTTTGGGTCACTGCTGAGACCATCCC
TTCTAGAGAGAGCTGAAGGTAGAGATACCCTTGAGAAAACATGGCTGCTGACTCTAGTTT
TTCCTGTTGGCCGCCAGAGGATGTGGCTCTTAATGTTGACTGGGTTCACAACCAAGGAGA
GTCTGAAGGTTGTAAAACATTCCTTTAAAGCAGGGTTGGCAAACTTTCTTTAAAGAGCTA
GCAATGAATATTTTAAGCTCTGAGAGCTAAGTGGTCTCAGTTAAAACTATTCAGGCTCTG
CCCTTGTTTGAAAACAACCACAGGTAGTCTGTAAAGGAATGAGTATAGCTGTGTTCCAGT
AGAACTCTCTATGAAAACAGCCCAAGTATTCAGGAGGTCATAATTTTCCCACTGCCTTCT
TAAAGTACATGGATGATGTAAGCATTTACTGAATAGTGAAATTAGCCCCAATTATAGTAA
GAATTAGGCTCCTCTCAACGTTGATAAGACATCACTTATTTCAAGGGGTATGTAGATTAT
GTTACTTACAACTCTGCCTGCATTAAGTAACCAACGGTTAAGAGATATGTTGTAGCTCAT
CTTGCTCTGTGTAGTTCTATCACTTATATGGAATTGACAGCAGGTATGTGTAGGCTCTGC
TGACCAATCCATAACTTACTCAGCTTCCCTGCATTCATGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGATTGAGACCAACTTTCCTTTTGAAAAGATACTCTTCTCTCCTTGGAATTCTGGAA
TACTTCAGCTGGTTCAAAGGAGTGGGTCTCTGACCTTAGCTCTTAGCTCAGATCTAGCAC
TGGACCCGCTCTTAGGAAAGGTAACTGAGTCGTAGTTTGGGTCACTGCTGAGACCATCCC
TTCTAGAGAGAGCTGAAGGTAGAGATACCCTTGAGAAAACATGGCTGCTGACTCTAGTTT
TTCCTGTTGGCCGCCAGAGGATGTGGCTCTTAATGTTGACTGGGTTCACAACCAAGGAGA
GTCTGAAGGTTGTAAAACATTCCTTTAAAGCAGGGTTGGCAAACTTTCTTTAAAGAGCTA
GCAATGAATATTTTAAGCTCTGAGAGCTAAGTGGTCTCAGTTAAAACTATTCAGGCTCTG
CCCTTGTTTGAAAACAACCACAGGTAGTCTGTAAAGGAATGAGTATAGCTGTGTTCCAGT
AGAACTCTCTATGAAAACAGCCCAAGTATTCAGGAGGTCATAATTTTCCCACTGCCTTCT
TAAAGTACATGGATGATGTAAGCATTTACTGAATAGTGAAATTAGCCCCAATTATAGTAA
GAATTAGGCTCCTCTCAACGTTGATAAGACATCACTTATTTCAAGGGGTATGTAGATTAT
GTTACTTACAACTCTGCCTGCATTAAGTAACCAACGGTTAAGAGATATGTTGTAGCTCAT
CTTGCTCTGTGTAGTTCTATCACTTATATGGAATTGACAGCAGGTATGTGTAGGCTCTGC
TGACCAATCCATAACTTACTCAGCTTCCCTGCATTCATGAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               64-182, + strand, RNAz p=0.98004

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               64-182, + strand, RNAz p=0.98004

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               26-594, gnl|bosTau2|chr8 (23698635-23698089)
               

               
               26-594, gnl|Hg17|chr9 (74868668-74868114)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-594, gnl|bosTau2|chr8 (23698635-23698089)
               

               
               26-594, gnl|Hg17|chr9 (74868668-74868114)

	26-594, gnl\|bosTau2\|chr8 (23698635-23698089)
	26-594, gnl\|Hg17\|chr9 (74868668-74868114)