Tra1-TCH01G080079
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATATGATTGAAGGACAAGGACATGGAGCTGTATTTGACTGTAAGTTTTCACAGGATGGAC AGCATTTTGCCTGTACAGATTCTCACGGTCACCTTCTGATATTTGGTTTTGGATGCAGCA AGCCATATGAAAAGATTCCCGATCAGATGTTCTTCCATACTGACTATCGACCACTGATTA GAGATTCTAATAATTATGTCTTAGATGAGCAAACTCAGCAAGCTCCTCACCTTATGCCTC CACCATTCTTAGTAGATGTGGATGGAAATCCTCATCCAACTAAGTATCAGAGATTAGTAC CAGGCCGAGAAAATTCTTCAGATGAACATTTGGTGCCACAGCTAGGCTACGTGGCAACAA GTGATGGAGAGGTAATTGAACAAATTATAAGCCTGCAAACCAATGATAATGGTGAACGAA GCCCAGAGCCCAGTGTTCTGGATGGAATGATAAGACAGTTGCAGCAGCAGCAAGATCAGA GAATGGGAGCAGGTCAGGACGCTCTTCCAAGTGGACTTCCGAATGGGGAAGAAACCCCCC GAAGAGGTTTTAGAAGGCTGAGCTTAGACATCCAGTCCCCTCCAAACATTGGTCTGCGCC GCAGTGGACAGGTCGAAGGTGTCCGTCAGATGCATCAGAATGCTCCCCGCAGTCAGATTG CCACAGAGCGTGACCTGCAGGCTTGGAGACGAAGAGTGGTTGTACCAGAGGTACCACTAG GCATCTTTAGGAAATTGGAAGACTTCAGAATAGAGAAAGGTGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATATGATTGAAGGACAAGGACATGGAGCTGTATTTGACTGTAAGTTTTCACAGGATGGAC AGCATTTTGCCTGTACAGATTCTCACGGTCACCTTCTGATATTTGGTTTTGGATGCAGCA AGCCATATGAAAAGATTCCCGATCAGATGTTCTTCCATACTGACTATCGACCACTGATTA GAGATTCTAATAATTATGTCTTAGATGAGCAAACTCAGCAAGCTCCTCACCTTATGCCTC CACCATTCTTAGTAGATGTGGATGGAAATCCTCATCCAACTAAGTATCAGAGATTAGTAC CAGGCCGAGAAAATTCTTCAGATGAACATTTGGTGCCACAGCTAGGCTACGTGGCAACAA GTGATGGAGAGGTAATTGAACAAATTATAAGCCTGCAAACCAATGATAATGGTGAACGAA GCCCAGAGCCCAGTGTTCTGGATGGAATGATAAGACAGTTGCAGCAGCAGCAAGATCAGA GAATGGGAGCAGGTCAGGACGCTCTTCCAAGTGGACTTCCGAATGGGGAAGAAACCCCCC GAAGAGGTTTTAGAAGGCTGAGCTTAGACATCCAGTCCCCTCCAAACATTGGTCTGCGCC GCAGTGGACAGGTCGAAGGTGTCCGTCAGATGCATCAGAATGCTCCCCGCAGTCAGATTG CCACAGAGCGTGACCTGCAGGCTTGGAGACGAAGAGTGGTTGTACCAGAGGTACCACTAG GCATCTTTAGGAAATTGGAAGACTTCAGAATAGAGAAAGGTGAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 172-291, - strand, RNAz p=0.939507 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 172-291, - strand, RNAz p=0.939507 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 133-362, gnl|bosTau2|chr1 (89202965-89203194) | |
| 133-362, gnl|Hg17|chr21 (39558483-39558254) | |
| 133-362, gnl|Mm7|chr16 (96383655-96383426) | |
| 545-731, gnl|bosTau2|chr1 (89213963-89214149) | |
| 545-731, gnl|canFam2|chr31 (36345766-36345942) | |
| 545-731, gnl|danRer3|chr15 (545632-545804) | |
| 545-731, gnl|dasNov1|scaffold_79957 (1074-1250) | |
| 545-731, gnl|echTel1|scaffold_8993 (777-601) | |
| 545-731, gnl|fr1|chrUn (87930089-87930239) | |
| 545-731, gnl|galGal2|chr1 (101678333-101678509) | |
| 545-731, gnl|hg17|chr21 (39549436-39549612) | |
| 545-731, gnl|Hg17|chr21 (39549626-39549440) | |
| 545-731, gnl|loxAfr1|scaffold_1015 (50035-49859) | |
| 545-731, gnl|mm7|chr16 (96380952-96381128) | |
| 545-731, gnl|Mm7|chr16 (96381142-96380956) | |
| 545-731, gnl|monDom2|scaffold_29 (3395611-3395435) | |
| 545-731, gnl|oryCun1|scaffold_181018 (3091-3267) | |
| 545-731, gnl|panTro1|chr22 (39585464-39585640) | |
| 545-731, gnl|rheMac2|chr3 (7386835-7386659) | |
| 545-731, gnl|rn3|chr11 (36400248-36400424) | |
| 545-731, gnl|tetNig1|chr14 (7916572-7916422) | |
| 545-731, gnl|xenTro1|scaffold_440 (400184-400355) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 133-362, gnl|bosTau2|chr1 (89202965-89203194) | |
| 133-362, gnl|Hg17|chr21 (39558483-39558254) | |
| 133-362, gnl|Mm7|chr16 (96383655-96383426) | |
| 545-731, gnl|bosTau2|chr1 (89213963-89214149) | |
| 545-731, gnl|canFam2|chr31 (36345766-36345942) | |
| 545-731, gnl|danRer3|chr15 (545632-545804) | |
| 545-731, gnl|dasNov1|scaffold_79957 (1074-1250) | |
| 545-731, gnl|echTel1|scaffold_8993 (777-601) | |
| 545-731, gnl|fr1|chrUn (87930089-87930239) | |
| 545-731, gnl|galGal2|chr1 (101678333-101678509) | |
| 545-731, gnl|hg17|chr21 (39549436-39549612) | |
| 545-731, gnl|Hg17|chr21 (39549626-39549440) | |
| 545-731, gnl|loxAfr1|scaffold_1015 (50035-49859) | |
| 545-731, gnl|mm7|chr16 (96380952-96381128) | |
| 545-731, gnl|Mm7|chr16 (96381142-96380956) | |
| 545-731, gnl|monDom2|scaffold_29 (3395611-3395435) | |
| 545-731, gnl|oryCun1|scaffold_181018 (3091-3267) | |
| 545-731, gnl|panTro1|chr22 (39585464-39585640) | |
| 545-731, gnl|rheMac2|chr3 (7386835-7386659) | |
| 545-731, gnl|rn3|chr11 (36400248-36400424) | |
| 545-731, gnl|tetNig1|chr14 (7916572-7916422) | |
| 545-731, gnl|xenTro1|scaffold_440 (400184-400355) |