Non-Coding RNA Search

Tra1-TCH01G090082

Sequence:


               
               CTTACTCTCCATGCAAATGGTGCACTGCTTTGGGGAATATATGAGAGCTATTTGCTGGGC
AGTGAAGGGAGCACAATTAACTCTCTGGAGAAGAATTCATCCAGAACACGGCAGTGAGTT
TGATGTCCCAGATGCGATGAATTAAAGTTACGATATAAAGGAAGCCCTTAATCATGCTCA
CCCCTGTACGCATGGAGTGAGGTGAGTGTTGTGGAGCAGGTATAATGCTGTGGCTGTTTT
GAGAGAGGTCTGTATTTTCATTAAAAATACTCATGTTTGAGGAAACTTAGTGTGACTTTT
GGTATATCTGAGTCAGTGTAATTATTATCTCCGTTGTCGTTGTCGTGATGGGATTCAAGA
ACTGAAACTTAAAAAGTTTCCAGTTTGTTCTGATTCATCATTTGCCATTCTTGTAAAGGT
AGGTGCTCAGAACGTCAAATCTCCCCTAAGGCTACAAACTCTATTTCCTATCTGACTTTT
AGGCTATAACACCTAGGTTGTTATGTGGTAATGCTTTCTGGTTGTCAAAGCACTGTTACC
TACGTTGTCATATTCGATCCTTGCATTGTTATTCCCATGTTATGGGTGGGGAAACTGAGG
TTCAGCAAGGGCAACTGATTTACAGCATAAGTAAGACCTAGGTTGGGCTGCCTTGAACAG
TTTGATCCTAATTTTCCGGAGGGAGAATTTTGTTGATTAGAATACAGGGAAGGATTCTCT
TAGGTAATCAGTTTTTATAAATTAAAATGGCTGCCACACATGCTGGACTTCCCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTACTCTCCATGCAAATGGTGCACTGCTTTGGGGAATATATGAGAGCTATTTGCTGGGC
AGTGAAGGGAGCACAATTAACTCTCTGGAGAAGAATTCATCCAGAACACGGCAGTGAGTT
TGATGTCCCAGATGCGATGAATTAAAGTTACGATATAAAGGAAGCCCTTAATCATGCTCA
CCCCTGTACGCATGGAGTGAGGTGAGTGTTGTGGAGCAGGTATAATGCTGTGGCTGTTTT
GAGAGAGGTCTGTATTTTCATTAAAAATACTCATGTTTGAGGAAACTTAGTGTGACTTTT
GGTATATCTGAGTCAGTGTAATTATTATCTCCGTTGTCGTTGTCGTGATGGGATTCAAGA
ACTGAAACTTAAAAAGTTTCCAGTTTGTTCTGATTCATCATTTGCCATTCTTGTAAAGGT
AGGTGCTCAGAACGTCAAATCTCCCCTAAGGCTACAAACTCTATTTCCTATCTGACTTTT
AGGCTATAACACCTAGGTTGTTATGTGGTAATGCTTTCTGGTTGTCAAAGCACTGTTACC
TACGTTGTCATATTCGATCCTTGCATTGTTATTCCCATGTTATGGGTGGGGAAACTGAGG
TTCAGCAAGGGCAACTGATTTACAGCATAAGTAAGACCTAGGTTGGGCTGCCTTGAACAG
TTTGATCCTAATTTTCCGGAGGGAGAATTTTGTTGATTAGAATACAGGGAAGGATTCTCT
TAGGTAATCAGTTTTTATAAATTAAAATGGCTGCCACACATGCTGGACTTCCCACCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               3-150, - strand, RNAz p=0.972193
               

               
               295-454, + strand, RNAz p=0.932737

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-150, - strand, RNAz p=0.972193
               

               
               295-454, + strand, RNAz p=0.932737

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               3-694, gnl|bosTau2|chr8 (47704315-47704998)
               

               
               3-694, gnl|Hg17|chr11 (117593011-117592350)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-694, gnl|bosTau2|chr8 (47704315-47704998)
               

               
               3-694, gnl|Hg17|chr11 (117593011-117592350)

	3-150, - strand, RNAz p=0.972193
	295-454, + strand, RNAz p=0.932737

	3-694, gnl\|bosTau2\|chr8 (47704315-47704998)
	3-694, gnl\|Hg17\|chr11 (117593011-117592350)