Non-Coding RNA Search

Tra1-TCH01H010065

Sequence:


               
               TTAAAAATTTGCCTTCCAGTCCAGAACCCCTAGAATCAGAGACTCTTACCTTTGTCCCGT
CTAGTCTATTACGAAGTCGGAAGAAAGTATTTCAGTGAAAAAAAGCTTTTAGACAGAAGC
TTAAAATGATTTGTTTCATGCTCACTCCCACCCCCTCCCAGCCCTGCCTCGGAGCTTTTT
GCCCTCCTGCTCCTGGTCCGCGCTGGGGGTGCTGGGGTGCCCTTGCTCTGGCAATGGGCT
GCTGCTTTAGGACACACGAGCTTTATTTTGTAGTCTGCAAATATGAAGCATATCATATTT
TTTCAGGTTGACTTTCTTATTAAAAAAAAATCACCTTGTATTCAAATGAATACGGTACAT
ACCAGAGCTCGCCCTCGATTTCCTTGTAAGTTTGCCCAGCTTGAAACTCTAGGTGGGTTG
AGAACAGGCAGCTTTCATTAGATGAGTGTTTTTGAGAAGCCCATGGGAGAGAAGGAGTAC
CTCTGAAATAAAATAAAAACTAAAACAGAACAATACCCTTAAGTCAGCAGTTGCCATCCC
CCTTTTCTGTTCTTTCTGGGCCTGGTCCAGTGGTCTCAGAAGAACAATGAAGCACCAAGA
GGATGAATGGAAAGACAATTCATACCAGACGCCTTCTTTAGATTCCATTTTTCAAAACTA
GAGGGAGAAATTATGGGGGGAATAGATTGAGATGCATGAATATATAAGACAGATTTTTAA
CAGATGGGAGAATAAAATCCAAGCAAATAATACCTTGGGGACTTGACATTATTTATATGT
GGTCTTTTAATGCTTGACTGAGTACATATTTCATTTATCTAAGAAGTCATACCAAATATT
A

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAATTTGCCTTCCAGTCCAGAACCCCTAGAATCAGAGACTCTTACCTTTGTCCCGT
CTAGTCTATTACGAAGTCGGAAGAAAGTATTTCAGTGAAAAAAAGCTTTTAGACAGAAGC
TTAAAATGATTTGTTTCATGCTCACTCCCACCCCCTCCCAGCCCTGCCTCGGAGCTTTTT
GCCCTCCTGCTCCTGGTCCGCGCTGGGGGTGCTGGGGTGCCCTTGCTCTGGCAATGGGCT
GCTGCTTTAGGACACACGAGCTTTATTTTGTAGTCTGCAAATATGAAGCATATCATATTT
TTTCAGGTTGACTTTCTTATTAAAAAAAAATCACCTTGTATTCAAATGAATACGGTACAT
ACCAGAGCTCGCCCTCGATTTCCTTGTAAGTTTGCCCAGCTTGAAACTCTAGGTGGGTTG
AGAACAGGCAGCTTTCATTAGATGAGTGTTTTTGAGAAGCCCATGGGAGAGAAGGAGTAC
CTCTGAAATAAAATAAAAACTAAAACAGAACAATACCCTTAAGTCAGCAGTTGCCATCCC
CCTTTTCTGTTCTTTCTGGGCCTGGTCCAGTGGTCTCAGAAGAACAATGAAGCACCAAGA
GGATGAATGGAAAGACAATTCATACCAGACGCCTTCTTTAGATTCCATTTTTCAAAACTA
GAGGGAGAAATTATGGGGGGAATAGATTGAGATGCATGAATATATAAGACAGATTTTTAA
CAGATGGGAGAATAAAATCCAAGCAAATAATACCTTGGGGACTTGACATTATTTATATGT
GGTCTTTTAATGCTTGACTGAGTACATATTTCATTTATCTAAGAAGTCATACCAAATATT
A

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               150-268, + strand, RNAz p=0.938794

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-268, + strand, RNAz p=0.938794

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-841, gnl|bosTau2|chr20 (24240056-24239219)
               

               
               4-841, gnl|Hg17|chr5 (36701772-36702616)
               

               
               4-841, gnl|Mm7|chr15 (8485398-8484595)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-841, gnl|bosTau2|chr20 (24240056-24239219)
               

               
               4-841, gnl|Hg17|chr5 (36701772-36702616)
               

               
               4-841, gnl|Mm7|chr15 (8485398-8484595)

	4-841, gnl\|bosTau2\|chr20 (24240056-24239219)
	4-841, gnl\|Hg17\|chr5 (36701772-36702616)
	4-841, gnl\|Mm7\|chr15 (8485398-8484595)