Non-Coding RNA Search

Tra1-TCH01H020045

Sequence:


               
               TGGCTTTCCAAATCTAAGGAAAACTGGAAAATGGGCAGAGTTGGTCCTAGAGTGTCGCAT
GGTACAGCATGCCTTGTTCTGTCCCTGAGACAGGGGTTTGATTTAAAATGCATTATTCTG
AGACTAGCCTTGAAAGCCTGCCTTTTACCATCTCTGCTTTCCATCCCTCCTGGAAGAGGA
CTGGACTCCCATTCCCACCATTGCCTTTTGGGACTCGTTATCTTCCTCGTCCCCTAGGTC
CCTGTGATGGTCTGGGCTCCATTTCCTCAGTGTCCCTGTACAGGAGTAGTGGAAATAGAT
CAAGCTGATATCAATGACCTGACATCACAGTGGGTTTCATTTATATGTTATGCTCTCAAG
TGACTAATCAGTTCAACCCAGTGAAACACTTCCTGTACTGCTTTAGAGTGGTAGAAATTA
CAAGCCTGGCAAGTTAGAGTTGGTCAGGGATTTTTGCTCCCTTTAAATCTTTATACATAG
ATATCTGCCCATTGTGCCCATTTAAAGCAACTTTATTTACTTTAAAGGCCCCAGCCATGG
CATATGAAATTTCCAAAACTAAggttgaatcacagctgtagctgccagcctatgccatag
ccacagcaatgcggggtcaaagccacctacaccacagttcatgggaactccagatcctta
acccactgagcagggacagggatggaacctgcatGCAATCTCATGGGTTCATTACCCCTG
AGCTACAACANGAACTCCCAAAGCAACTTTCTTTAGAAGTATACCACTTTAGAAGAAGCT
GCTTGCAAGGCTTGCTAGCTTTAGGCAGTGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTTTCCAAATCTAAGGAAAACTGGAAAATGGGCAGAGTTGGTCCTAGAGTGTCGCAT
GGTACAGCATGCCTTGTTCTGTCCCTGAGACAGGGGTTTGATTTAAAATGCATTATTCTG
AGACTAGCCTTGAAAGCCTGCCTTTTACCATCTCTGCTTTCCATCCCTCCTGGAAGAGGA
CTGGACTCCCATTCCCACCATTGCCTTTTGGGACTCGTTATCTTCCTCGTCCCCTAGGTC
CCTGTGATGGTCTGGGCTCCATTTCCTCAGTGTCCCTGTACAGGAGTAGTGGAAATAGAT
CAAGCTGATATCAATGACCTGACATCACAGTGGGTTTCATTTATATGTTATGCTCTCAAG
TGACTAATCAGTTCAACCCAGTGAAACACTTCCTGTACTGCTTTAGAGTGGTAGAAATTA
CAAGCCTGGCAAGTTAGAGTTGGTCAGGGATTTTTGCTCCCTTTAAATCTTTATACATAG
ATATCTGCCCATTGTGCCCATTTAAAGCAACTTTATTTACTTTAAAGGCCCCAGCCATGG
CATATGAAATTTCCAAAACTAAggttgaatcacagctgtagctgccagcctatgccatag
ccacagcaatgcggggtcaaagccacctacaccacagttcatgggaactccagatcctta
acccactgagcagggacagggatggaacctgcatGCAATCTCATGGGTTCATTACCCCTG
AGCTACAACANGAACTCCCAAAGCAACTTTCTTTAGAAGTATACCACTTTAGAAGAAGCT
GCTTGCAAGGCTTGCTAGCTTTAGGCAGTGGTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               5-272, + strand, RNAz p=0.977292
               

               
               10-337, - strand, RNAz p=0.998269

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-272, + strand, RNAz p=0.977292
               

               
               10-337, - strand, RNAz p=0.998269

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               5-337, gnl|bosTau2|chr8 (21937449-21937777)
               

               
               5-337, gnl|canFam2|chr1 (92247351-92247633)
               

               
               5-337, gnl|dasNov1|scaffold_9415 (8150-7846)
               

               
               5-337, gnl|hg17|chr9 (242803-243114)
               

               
               5-337, gnl|Hg17|chr9 (242899-243228)
               

               
               5-337, gnl|mm7|chr19 (24738586-24738881)
               

               
               5-337, gnl|oryCun1|scaffold_200977 (81938-82221)
               

               
               5-337, gnl|panTro1|chr11 (229493-229806)
               

               
               5-337, gnl|rheMac2|chr15 (76954641-76954328)
               

               
               5-337, gnl|rn3|chr1 (228640301-228640593)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-337, gnl|bosTau2|chr8 (21937449-21937777)
               

               
               5-337, gnl|canFam2|chr1 (92247351-92247633)
               

               
               5-337, gnl|dasNov1|scaffold_9415 (8150-7846)
               

               
               5-337, gnl|hg17|chr9 (242803-243114)
               

               
               5-337, gnl|Hg17|chr9 (242899-243228)
               

               
               5-337, gnl|mm7|chr19 (24738586-24738881)
               

               
               5-337, gnl|oryCun1|scaffold_200977 (81938-82221)
               

               
               5-337, gnl|panTro1|chr11 (229493-229806)
               

               
               5-337, gnl|rheMac2|chr15 (76954641-76954328)
               

               
               5-337, gnl|rn3|chr1 (228640301-228640593)

	5-272, + strand, RNAz p=0.977292
	10-337, - strand, RNAz p=0.998269

	5-337, gnl\|bosTau2\|chr8 (21937449-21937777)
	5-337, gnl\|canFam2\|chr1 (92247351-92247633)
	5-337, gnl\|dasNov1\|scaffold_9415 (8150-7846)
	5-337, gnl\|hg17\|chr9 (242803-243114)
	5-337, gnl\|Hg17\|chr9 (242899-243228)
	5-337, gnl\|mm7\|chr19 (24738586-24738881)
	5-337, gnl\|oryCun1\|scaffold_200977 (81938-82221)
	5-337, gnl\|panTro1\|chr11 (229493-229806)
	5-337, gnl\|rheMac2\|chr15 (76954641-76954328)
	5-337, gnl\|rn3\|chr1 (228640301-228640593)