Non-Coding RNA Search

Tra1-TCH01H030071

Sequence:


               
               TCTCCTTAGCCCTCCCTCATTCATTGATGGGCCACAATTCATCTCACATGGCACCTGACA
GTACAGGGCTGCCCTTGAAATAATTAGTAGTTGGGATGCTGCTAGTGGCATGGAGTCAGC
CCTCTCCAGGCTGGGAGGTGGGGTTAGAATCAAGGAATAAAGCCCTAAGTATTGGCACCA
GAAAGCTCCAAAGAAATACTAGTGGATTTGAATTGCTAGAGACAGTTCATTATTTACTCC
ACAAAGTGGACTTATTAAAAGGCCATGAAAGGAGGTTATGTCATTTGCAAATAAATCTGT
GCTACAAAGCCAGAACCAGCAATGTCCAAGAGCCCTGGGGAAGCTCAAGTAAAAGGCCAT
TGCTTGGAAATGGGTTTTGTCAGAGTACTCCACCCCCACTCTCACCCTTCATTTGGGGAG
GGCTGTTCATGAGGAAAGTGTCAGAGACGCTGGTTCTTGTCAAAGGCAATTAATGGGGAC
TTGAAGCTCCAGTTTTGGGGAATGAGATTTCAAAACAAAACAAAACCATCAGTGAGCTTC
ATTTGAGCAATATCTGTGGCTATACCATCAATCTTCTTAGTTGTCAGTCTCTGCCTTCCA
GTACCCAGTTCTGGAAGGAGTCAATGTGGCAATTGAAGAGAATTCAGCAACTTTCTCCTG
TGTAAGAAAATTCTTGATTGTCAAGCTTACAGAAGAATTTTATTCACTTAAAAAGTTGCG
AACTTGGGGACAAGAAGCTCTGTCATAGCTATAAGCATTGTAGGCACATGTGGTCCGTTG
GAAACAGTGCCCACTTAGCCAGGGGAGAAGACCTGGAGTGTGCANGAGTGAGTTAAGCAG
TTGTGAAGCACTGGTGTGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCTTAGCCCTCCCTCATTCATTGATGGGCCACAATTCATCTCACATGGCACCTGACA
GTACAGGGCTGCCCTTGAAATAATTAGTAGTTGGGATGCTGCTAGTGGCATGGAGTCAGC
CCTCTCCAGGCTGGGAGGTGGGGTTAGAATCAAGGAATAAAGCCCTAAGTATTGGCACCA
GAAAGCTCCAAAGAAATACTAGTGGATTTGAATTGCTAGAGACAGTTCATTATTTACTCC
ACAAAGTGGACTTATTAAAAGGCCATGAAAGGAGGTTATGTCATTTGCAAATAAATCTGT
GCTACAAAGCCAGAACCAGCAATGTCCAAGAGCCCTGGGGAAGCTCAAGTAAAAGGCCAT
TGCTTGGAAATGGGTTTTGTCAGAGTACTCCACCCCCACTCTCACCCTTCATTTGGGGAG
GGCTGTTCATGAGGAAAGTGTCAGAGACGCTGGTTCTTGTCAAAGGCAATTAATGGGGAC
TTGAAGCTCCAGTTTTGGGGAATGAGATTTCAAAACAAAACAAAACCATCAGTGAGCTTC
ATTTGAGCAATATCTGTGGCTATACCATCAATCTTCTTAGTTGTCAGTCTCTGCCTTCCA
GTACCCAGTTCTGGAAGGAGTCAATGTGGCAATTGAAGAGAATTCAGCAACTTTCTCCTG
TGTAAGAAAATTCTTGATTGTCAAGCTTACAGAAGAATTTTATTCACTTAAAAAGTTGCG
AACTTGGGGACAAGAAGCTCTGTCATAGCTATAAGCATTGTAGGCACATGTGGTCCGTTG
GAAACAGTGCCCACTTAGCCAGGGGAGAAGACCTGGAGTGTGCANGAGTGAGTTAAGCAG
TTGTGAAGCACTGGTGTGAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-198, + strand, RNAz p=0.547795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-198, + strand, RNAz p=0.547795

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-859, gnl|bosTau2|chr28 (25259734-25258888)
               

               
               1-859, gnl|Hg17|chr10 (77038783-77039500)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-859, gnl|bosTau2|chr28 (25259734-25258888)
               

               
               1-859, gnl|Hg17|chr10 (77038783-77039500)

	1-859, gnl\|bosTau2\|chr28 (25259734-25258888)
	1-859, gnl\|Hg17\|chr10 (77038783-77039500)