Tra1-TCH01H040101
|
AACCTATTGGGATCACTTTTACCTTCACCTGTTCTTTTTCTCTTAATGCGTGCCATGCAT
TTTTTTCATACAATAAGTAGTCCTTTGAGAACTGTTTTAAGCTGAGCAGTGCCCTGCAGT
GAGCAAGGGTGGAGTTGGGGGGCTAGGCTGGGACGAGGTCCTTGGCACCCCTTCCTTGCC
TGGCACTCAGGTGCCCGGCTCAGTTGGATATCAGGCATCCCCACCAGGGAGCCCAGCCCC
CCTAAACCCTCCGCCATCTCCATCCCCCGTAGGCAGCACAGGAGGCCGAAGCCATCCAGG
AGGAGATGAATGAGAAGATTGAGCGTCTCAAGGCCGAGCTGGTGGTGTTTAAGGGGCTCA
TGAGTGACGTAAGTGCCACCGGCAGCCAACCCCAGGCGTCATGCCCTCCCCCACACCCAT
CATGCAGATACCTCAGAGGTTCCCATGCACATCTCAGTGGGAACCTGGTTGCTTTAGAGC
ACGAGCTAGGCTTCAGTCCCATCCCTGCTTGCTTGCTCTGTGACCTTAGATAGTTACCTC
ACCTCTCTGAACCTCAGGTCTCTCATCGGCAAAATGGGTTTGGGGGAAAATTCTTTACTT
GAAAAGGTTAATCATTCACACAGAAGCTGCTATGATGTGTATGAAGCACCGAGCCAGTGC
TCGGGACCCAGACCGTGCTCACCACTCAGTAGCCACTGCCATGGCAGCTGAAGTGTCCAG
ACCACCAAAGCCATGGCTTTAGTTCCACTCTAGGTTGACTTGGGACAAGTTGTTTTCCTT
TGCTGGGCCTCATTTTGCCTGTCTGGTCAATGGGTCTATTGACCCCTGCCCTACCTTCCT
CATGAGAAGGTGGCTTAAAGGAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AACCTATTGGGATCACTTTTACCTTCACCTGTTCTTTTTCTCTTAATGCGTGCCATGCAT
TTTTTTCATACAATAAGTAGTCCTTTGAGAACTGTTTTAAGCTGAGCAGTGCCCTGCAGT
GAGCAAGGGTGGAGTTGGGGGGCTAGGCTGGGACGAGGTCCTTGGCACCCCTTCCTTGCC
TGGCACTCAGGTGCCCGGCTCAGTTGGATATCAGGCATCCCCACCAGGGAGCCCAGCCCC
CCTAAACCCTCCGCCATCTCCATCCCCCGTAGGCAGCACAGGAGGCCGAAGCCATCCAGG
AGGAGATGAATGAGAAGATTGAGCGTCTCAAGGCCGAGCTGGTGGTGTTTAAGGGGCTCA
TGAGTGACGTAAGTGCCACCGGCAGCCAACCCCAGGCGTCATGCCCTCCCCCACACCCAT
CATGCAGATACCTCAGAGGTTCCCATGCACATCTCAGTGGGAACCTGGTTGCTTTAGAGC
ACGAGCTAGGCTTCAGTCCCATCCCTGCTTGCTTGCTCTGTGACCTTAGATAGTTACCTC
ACCTCTCTGAACCTCAGGTCTCTCATCGGCAAAATGGGTTTGGGGGAAAATTCTTTACTT
GAAAAGGTTAATCATTCACACAGAAGCTGCTATGATGTGTATGAAGCACCGAGCCAGTGC
TCGGGACCCAGACCGTGCTCACCACTCAGTAGCCACTGCCATGGCAGCTGAAGTGTCCAG
ACCACCAAAGCCATGGCTTTAGTTCCACTCTAGGTTGACTTGGGACAAGTTGTTTTCCTT
TGCTGGGCCTCATTTTGCCTGTCTGGTCAATGGGTCTATTGACCCCTGCCCTACCTTCCT
CATGAGAAGGTGGCTTAAAGGAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
232-428, gnl|bosTau2|chr2 (60841158-60840956) |
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232-428, gnl|Hg17|chr1 (18991609-18991421) |
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232-428, gnl|Mm7|chr4 (138983399-138983592) |
| |
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476-864, gnl|bosTau2|chr2 (60844807-60844415) |
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476-864, gnl|canFam2|chr2 (82561810-82561500) |
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476-864, gnl|echTel1|scaffold_175573 (1699-1452) |
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476-864, gnl|hg17|chr1 (18995053-18995382) |
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476-864, gnl|Hg17|chr1 (18995505-18995112) |
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476-864, gnl|loxAfr1|scaffold_24720 (12822-13151) |
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476-864, gnl|mm7|chr4 (138980009-138979813) |
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476-864, gnl|oryCun1|scaffold_107290 (2802-3098) |
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476-864, gnl|panTro1|chr1 (19284298-19284630) |
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476-864, gnl|rheMac2|chr1 (21569887-21570214) |
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476-864, gnl|rn3|chr5 (158412733-158412594) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
232-428, gnl|bosTau2|chr2 (60841158-60840956) |
|
232-428, gnl|Hg17|chr1 (18991609-18991421) |
|
232-428, gnl|Mm7|chr4 (138983399-138983592) |
| |
|
476-864, gnl|bosTau2|chr2 (60844807-60844415) |
|
476-864, gnl|canFam2|chr2 (82561810-82561500) |
|
476-864, gnl|echTel1|scaffold_175573 (1699-1452) |
|
476-864, gnl|hg17|chr1 (18995053-18995382) |
|
476-864, gnl|Hg17|chr1 (18995505-18995112) |
|
476-864, gnl|loxAfr1|scaffold_24720 (12822-13151) |
|
476-864, gnl|mm7|chr4 (138980009-138979813) |
|
476-864, gnl|oryCun1|scaffold_107290 (2802-3098) |
|
476-864, gnl|panTro1|chr1 (19284298-19284630) |
|
476-864, gnl|rheMac2|chr1 (21569887-21570214) |
|
476-864, gnl|rn3|chr5 (158412733-158412594) |
