Non-Coding RNA Search

Tra1-TCH01H050082

Sequence:


               
               TTCTTTTCTGGGAGTTTAAAAATATTCCAGGTTTTCTGTCTGTAATGCTTGAGTACATTT
ATTCCTGGATGCCGAGGAGGCCCAAGGACCTCGCAGGCTCTCTAAGGCCTCTGATTCTTA
GAAGGTTAAGCCATGATGGAAACAGACGCTGCATCTGTGTCTTCTCTTATTTCGTGCATG
CAGGGGTGACCTTGGGGTGGGGGGATGCATTGTTCAGACCAACCCTTATCTCCTATTTGA
AGTCTGTTATTCTCATTTCTCTACCAAAAGAGGAACTAAACCTCACTGTTGCAATTAAGG
TCACGGCCAACAGCCAGCTAAAGAAGTCAGGGCTCCCTCCTCACACTGCTGCCCTCTCCC
CAGCTTTCTGATCCTCTCTAAGATGCAAGTGTTTGGGGAAAGAGAGGGCGTGGAGAGTGA
ACGAGAGAGATGCAAAGGGTACCTGGGGTACTTCCCATCCCTCGGAGAAGGAACTTGGCC
GCTCGCTTGCTGGATGTACTGCAGTGACAAGATGTGGATGTGCAGCTGGCAATTAGGTAT
GTAAGTGACCAGAGCCAGGGATTTCCAAGCACTTTCGAATGCTGCCAGCCTGCTTGCGGG
GAGAGGCTTGGAGGCTTCCAGCAAGACAATTAGCGCGTGTTAGATTGTGTCTTCTGGATG
GGAGCTGAGGTTCCCTGCCCACTCTGTTAGAGTTTATTTCATTAAGGTTGACCCAGTCCT
TCTCTCTGGGCAGAGAGCATGGCGATGGGTTCTATGGAAAAGACAGCACAGCGGTGGCAG
TGGAGGACGACTCCATGGATGGCAGGGGCTTTCTGAGACCCTGGTGGAGTCTCAGTCCTC
CCCTAGTNGACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTTTCTGGGAGTTTAAAAATATTCCAGGTTTTCTGTCTGTAATGCTTGAGTACATTT
ATTCCTGGATGCCGAGGAGGCCCAAGGACCTCGCAGGCTCTCTAAGGCCTCTGATTCTTA
GAAGGTTAAGCCATGATGGAAACAGACGCTGCATCTGTGTCTTCTCTTATTTCGTGCATG
CAGGGGTGACCTTGGGGTGGGGGGATGCATTGTTCAGACCAACCCTTATCTCCTATTTGA
AGTCTGTTATTCTCATTTCTCTACCAAAAGAGGAACTAAACCTCACTGTTGCAATTAAGG
TCACGGCCAACAGCCAGCTAAAGAAGTCAGGGCTCCCTCCTCACACTGCTGCCCTCTCCC
CAGCTTTCTGATCCTCTCTAAGATGCAAGTGTTTGGGGAAAGAGAGGGCGTGGAGAGTGA
ACGAGAGAGATGCAAAGGGTACCTGGGGTACTTCCCATCCCTCGGAGAAGGAACTTGGCC
GCTCGCTTGCTGGATGTACTGCAGTGACAAGATGTGGATGTGCAGCTGGCAATTAGGTAT
GTAAGTGACCAGAGCCAGGGATTTCCAAGCACTTTCGAATGCTGCCAGCCTGCTTGCGGG
GAGAGGCTTGGAGGCTTCCAGCAAGACAATTAGCGCGTGTTAGATTGTGTCTTCTGGATG
GGAGCTGAGGTTCCCTGCCCACTCTGTTAGAGTTTATTTCATTAAGGTTGACCCAGTCCT
TCTCTCTGGGCAGAGAGCATGGCGATGGGTTCTATGGAAAAGACAGCACAGCGGTGGCAG
TGGAGGACGACTCCATGGATGGCAGGGGCTTTCTGAGACCCTGGTGGAGTCTCAGTCCTC
CCCTAGTNGACGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               379-489, - strand, RNAz p=0.88318
               

               
               733-850, + strand, RNAz p=0.766717

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               379-489, - strand, RNAz p=0.88318
               

               
               733-850, + strand, RNAz p=0.766717

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-850, gnl|bosTau2|chr15 (11022960-11022104)
               

               
               1-850, gnl|Hg17|chr11 (113512910-113513779)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-850, gnl|bosTau2|chr15 (11022960-11022104)
               

               
               1-850, gnl|Hg17|chr11 (113512910-113513779)

	379-489, - strand, RNAz p=0.88318
	733-850, + strand, RNAz p=0.766717

	1-850, gnl\|bosTau2\|chr15 (11022960-11022104)
	1-850, gnl\|Hg17\|chr11 (113512910-113513779)