Non-Coding RNA Search

Tra1-TCH01H060090

Sequence:


               
               TAGTACAGTATCCTGGCACAGTCACGCTTCTTGGATTTTAGGGTCTCAGAGCTCAGCCCC
TTTCCACCAGAAAGGTCTAAAAGGCCAGGTGTGCAGCTTCCTGTCCTTAAGCCTGTTTCC
TCCAGCAAGAGGAGCTCATAAAAGACCTCACCTCACAGGGGGTTGAGGGCATGAACGGGT
GGCATATGCTCAGCCAGGGCCTCCCACACTGTGAGGATGGAACGGCGAGAACTGTCATCA
CTGCTCTTTCTTGGCTTGGATGTGGCCATTTTTGGCAGTGTCCCTGGACTTGGACGCTGA
GCCGCTCAGCGTGTGGACACTCCCGCACAGGTGAGAACAGGTACAGGGAATCTTAGGCTT
TGTCAGCCTTGGAGCCTGGATGAAAAAGTGTGCCCTCAAACCCAGGTTGCTGCTCAGTGT
CCCTACTCCATGGCCAGGGGCTGGATCTGGATCTGGATCTGGGAGGCAGGGATGAACGTG
AACAGCTCCTGTGTTGGGCACACAGTGGACATGGGGATTAGCCACCAAGATCTCCCTCAG
GGGGCTGAAGAACCCATAGCCCCCTCCCCACCGTACCTCTCAGCTCCTGGGAGTGCTGCC
TGGGGTGTAGCTCAGTTCACTCTGGGAACTGCCTGACCATGGGGGCAGCCCACATCCAGT
GTCAATCTATTAAATCTATTGGTGGGGGGAGTGTTCAAAAGCCTGACCCCCTTGCCCTGA
CTCTAAACATCTCTGAAGATTGAACCTAGCTTCATCACTCCATGCTGTCAGTTGAGGCCA
CTGTTTGGACATCACAGCTAAATTCTTCTGCTAGAGTTCCTGTCGTGGCTCAAGGGTAAC
AAACCCTACTAGTATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTACAGTATCCTGGCACAGTCACGCTTCTTGGATTTTAGGGTCTCAGAGCTCAGCCCC
TTTCCACCAGAAAGGTCTAAAAGGCCAGGTGTGCAGCTTCCTGTCCTTAAGCCTGTTTCC
TCCAGCAAGAGGAGCTCATAAAAGACCTCACCTCACAGGGGGTTGAGGGCATGAACGGGT
GGCATATGCTCAGCCAGGGCCTCCCACACTGTGAGGATGGAACGGCGAGAACTGTCATCA
CTGCTCTTTCTTGGCTTGGATGTGGCCATTTTTGGCAGTGTCCCTGGACTTGGACGCTGA
GCCGCTCAGCGTGTGGACACTCCCGCACAGGTGAGAACAGGTACAGGGAATCTTAGGCTT
TGTCAGCCTTGGAGCCTGGATGAAAAAGTGTGCCCTCAAACCCAGGTTGCTGCTCAGTGT
CCCTACTCCATGGCCAGGGGCTGGATCTGGATCTGGATCTGGGAGGCAGGGATGAACGTG
AACAGCTCCTGTGTTGGGCACACAGTGGACATGGGGATTAGCCACCAAGATCTCCCTCAG
GGGGCTGAAGAACCCATAGCCCCCTCCCCACCGTACCTCTCAGCTCCTGGGAGTGCTGCC
TGGGGTGTAGCTCAGTTCACTCTGGGAACTGCCTGACCATGGGGGCAGCCCACATCCAGT
GTCAATCTATTAAATCTATTGGTGGGGGGAGTGTTCAAAAGCCTGACCCCCTTGCCCTGA
CTCTAAACATCTCTGAAGATTGAACCTAGCTTCATCACTCCATGCTGTCAGTTGAGGCCA
CTGTTTGGACATCACAGCTAAATTCTTCTGCTAGAGTTCCTGTCGTGGCTCAAGGGTAAC
AAACCCTACTAGTATCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               39-133, - strand, RNAz p=0.979793
               

               
               239-380, - strand, RNAz p=0.991973

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-133, - strand, RNAz p=0.979793
               

               
               239-380, - strand, RNAz p=0.991973

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               9-413, gnl|bosTau2|chr2 (76789013-76789441)
               

               
               9-413, gnl|Hg17|chr1 (28741354-28742115)
               


               
               455-809, gnl|bosTau2|chr2 (76789459-76789817)
               

               
               455-809, gnl|Hg17|chr1 (28742153-28742497)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-413, gnl|bosTau2|chr2 (76789013-76789441)
               

               
               9-413, gnl|Hg17|chr1 (28741354-28742115)
               


               
               455-809, gnl|bosTau2|chr2 (76789459-76789817)
               

               
               455-809, gnl|Hg17|chr1 (28742153-28742497)

	39-133, - strand, RNAz p=0.979793
	239-380, - strand, RNAz p=0.991973

	9-413, gnl\|bosTau2\|chr2 (76789013-76789441)
	9-413, gnl\|Hg17\|chr1 (28741354-28742115)

	455-809, gnl\|bosTau2\|chr2 (76789459-76789817)
	455-809, gnl\|Hg17\|chr1 (28742153-28742497)