Non-Coding RNA Search

Tra1-TCH01H090017

Sequence:


               
               TTAAATGTGTGTGTGATGCTGCCCTTCTGTAGTTACTGTCAAGTCAGGGAGGAGGAAGGG
TATGAACCTCTTTCTAGCCCTGAGAGCAGCTGCTGAGCAGGCAGGAGTGGTTTTGGCAGG
AAAGTTTAGGAGTTAGAACCATCCTCTAGGTGTGTAGGTTTGAACCTCACTAGCTGTGGC
TCTGGTGGGGCAGGGGCCTGCAGGGGTGCCAGCACTGAGCCCCGGTCCTTAGTTCACTCT
GAGCTCTCCTCAGCTGTCACCCTTCACCCCTCAGCCCATTCCCATTTGTGCTTGTGTTCT
GGCTGTTCTCTTTCTGCATCTGGCCCTTGTGTTGGACTGTATATGAAGTAGGGCCAGAAG
CAAGTGTTGATTTGAGCTGGATCATTGGGTAGAGTGAAGCCAAGCCAAGTCTGAGAACCT
CAGATAAACCTTCAGCTGGGAGTTCTGGCTGGCGATTCACCCTGTCCTGAGCTGGTGGTC
TTGCTTTGGCATCGACATGGTCAGTAGCATCGGGCTGTTGGGGGTGTTTTTGTGGGTGAA
GGATGGAGATGTTTCAGGTTGTCTTCATCTGTAAGCTTGTGAAGGTAGAGGCCTGTTTTT
TTTTTTTTTTTTTCACTTTTTTAAAAGTTTCAGTTCTGGGCAttcccaatgtggctcagc
ggttaatgaacccaactagcatccatgaggactcgggttcaatccctggcctcgctcagt
gggttaaggatccggtgttgctgtgagctgtggtATAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAATGTGTGTGTGATGCTGCCCTTCTGTAGTTACTGTCAAGTCAGGGAGGAGGAAGGG
TATGAACCTCTTTCTAGCCCTGAGAGCAGCTGCTGAGCAGGCAGGAGTGGTTTTGGCAGG
AAAGTTTAGGAGTTAGAACCATCCTCTAGGTGTGTAGGTTTGAACCTCACTAGCTGTGGC
TCTGGTGGGGCAGGGGCCTGCAGGGGTGCCAGCACTGAGCCCCGGTCCTTAGTTCACTCT
GAGCTCTCCTCAGCTGTCACCCTTCACCCCTCAGCCCATTCCCATTTGTGCTTGTGTTCT
GGCTGTTCTCTTTCTGCATCTGGCCCTTGTGTTGGACTGTATATGAAGTAGGGCCAGAAG
CAAGTGTTGATTTGAGCTGGATCATTGGGTAGAGTGAAGCCAAGCCAAGTCTGAGAACCT
CAGATAAACCTTCAGCTGGGAGTTCTGGCTGGCGATTCACCCTGTCCTGAGCTGGTGGTC
TTGCTTTGGCATCGACATGGTCAGTAGCATCGGGCTGTTGGGGGTGTTTTTGTGGGTGAA
GGATGGAGATGTTTCAGGTTGTCTTCATCTGTAAGCTTGTGAAGGTAGAGGCCTGTTTTT
TTTTTTTTTTTTTCACTTTTTTAAAAGTTTCAGTTCTGGGCAttcccaatgtggctcagc
ggttaatgaacccaactagcatccatgaggactcgggttcaatccctggcctcgctcagt
gggttaaggatccggtgttgctgtgagctgtggtATAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               262-379, + strand, RNAz p=0.986945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-379, + strand, RNAz p=0.986945

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-613, gnl|bosTau2|chr4 (49818461-49817862)
               

               
               1-613, gnl|Hg17|chr7 (128424985-128425596)
               

               
               1-613, gnl|Mm7|chr6 (29670772-29671268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-613, gnl|bosTau2|chr4 (49818461-49817862)
               

               
               1-613, gnl|Hg17|chr7 (128424985-128425596)
               

               
               1-613, gnl|Mm7|chr6 (29670772-29671268)

	1-613, gnl\|bosTau2\|chr4 (49818461-49817862)
	1-613, gnl\|Hg17\|chr7 (128424985-128425596)
	1-613, gnl\|Mm7\|chr6 (29670772-29671268)