Non-Coding RNA Search

Tra1-TCH01H100015

Sequence:


               
               AAAAATGTTTTAAAAggagttcccatcatggctcagtggttaacaaacccaagtagtgtc
catgaggatacgggttcgatccctggcctcgctcagtgggttaaggaaccagcattgcca
gcctacaccacagccactgcaacgcaggatccgagccgtgtctgtgacctacaccacagc
tcacagcattgcagatccttaaccccctgagtgaggccagggatcgaacccgcatcctca
tggatactactcgggttcgttactgctgagccacagtgggaactccAGGTCCTATGTTCT
TAATGACACTGTCTCCCAAGTTCGAGGCGAGCGTCAGAGAAGGAGCCCCCCCTTGAGGAA
TGGGACACTCCCTATGGGAGAGGGGACTTTTCAGGGGTGCAGAATCCAGGCTTCAGGTGG
GTCTCTGTAAATGGAAGGCACCCCACGGAGGCAGTCAGATAGAGGACCAAGCAACCCTGT
ACCCCCATCCCATAGAGCTCAGGGCTAGCCCTGTGCACCCCCTCGCCCCCCATCCGCCAC
TTAACTCAGTCCTCTTGTCACCTCCCCCTTCCCGCTGTGGGTGACAAGGAGACCTGGCTG
GCTGCCATTCCCTGCCACCTTCCCCTCCACGTCCCTCTCCCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATGTTTTAAAAggagttcccatcatggctcagtggttaacaaacccaagtagtgtc
catgaggatacgggttcgatccctggcctcgctcagtgggttaaggaaccagcattgcca
gcctacaccacagccactgcaacgcaggatccgagccgtgtctgtgacctacaccacagc
tcacagcattgcagatccttaaccccctgagtgaggccagggatcgaacccgcatcctca
tggatactactcgggttcgttactgctgagccacagtgggaactccAGGTCCTATGTTCT
TAATGACACTGTCTCCCAAGTTCGAGGCGAGCGTCAGAGAAGGAGCCCCCCCTTGAGGAA
TGGGACACTCCCTATGGGAGAGGGGACTTTTCAGGGGTGCAGAATCCAGGCTTCAGGTGG
GTCTCTGTAAATGGAAGGCACCCCACGGAGGCAGTCAGATAGAGGACCAAGCAACCCTGT
ACCCCCATCCCATAGAGCTCAGGGCTAGCCCTGTGCACCCCCTCGCCCCCCATCCGCCAC
TTAACTCAGTCCTCTTGTCACCTCCCCCTTCCCGCTGTGGGTGACAAGGAGACCTGGCTG
GCTGCCATTCCCTGCCACCTTCCCCTCCACGTCCCTCTCCCACTG

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               308-447, - strand, RNAz p=0.970107
               

               
               324-443, - strand, RNAz p=0.522662
               

               
               519-645, - strand, RNAz p=0.918943
               

               
               523-628, - strand, RNAz p=0.999347

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-447, - strand, RNAz p=0.970107
               

               
               324-443, - strand, RNAz p=0.522662
               

               
               519-645, - strand, RNAz p=0.918943
               

               
               523-628, - strand, RNAz p=0.999347

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               287-645, gnl|bosTau2|chr19 (32322355-32322006)
               

               
               287-645, gnl|canFam2|chr9 (26130464-26130040)
               

               
               287-645, gnl|dasNov1|scaffold_188657 (434-4)
               

               
               287-645, gnl|echTel1|scaffold_319112 (42720-43035)
               

               
               287-645, gnl|hg17|chr17 (35085926-35086371)
               

               
               287-645, gnl|Hg17|chr17 (35086441-35086074)
               

               
               287-645, gnl|mm7|chr11 (98502323-98502752)
               

               
               287-645, gnl|Mm7|chr11 (98502816-98502470)
               

               
               287-645, gnl|monDom2|scaffold_18 (48644415-48644920)
               

               
               287-645, gnl|panTro1|chr19 (38322547-38322996)
               

               
               287-645, gnl|rheMac2|chr16 (49772121-49772563)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               287-645, gnl|bosTau2|chr19 (32322355-32322006)
               

               
               287-645, gnl|canFam2|chr9 (26130464-26130040)
               

               
               287-645, gnl|dasNov1|scaffold_188657 (434-4)
               

               
               287-645, gnl|echTel1|scaffold_319112 (42720-43035)
               

               
               287-645, gnl|hg17|chr17 (35085926-35086371)
               

               
               287-645, gnl|Hg17|chr17 (35086441-35086074)
               

               
               287-645, gnl|mm7|chr11 (98502323-98502752)
               

               
               287-645, gnl|Mm7|chr11 (98502816-98502470)
               

               
               287-645, gnl|monDom2|scaffold_18 (48644415-48644920)
               

               
               287-645, gnl|panTro1|chr19 (38322547-38322996)
               

               
               287-645, gnl|rheMac2|chr16 (49772121-49772563)

	308-447, - strand, RNAz p=0.970107
	324-443, - strand, RNAz p=0.522662
	519-645, - strand, RNAz p=0.918943
	523-628, - strand, RNAz p=0.999347

	287-645, gnl\|bosTau2\|chr19 (32322355-32322006)
	287-645, gnl\|canFam2\|chr9 (26130464-26130040)
	287-645, gnl\|dasNov1\|scaffold_188657 (434-4)
	287-645, gnl\|echTel1\|scaffold_319112 (42720-43035)
	287-645, gnl\|hg17\|chr17 (35085926-35086371)
	287-645, gnl\|Hg17\|chr17 (35086441-35086074)
	287-645, gnl\|mm7\|chr11 (98502323-98502752)
	287-645, gnl\|Mm7\|chr11 (98502816-98502470)
	287-645, gnl\|monDom2\|scaffold_18 (48644415-48644920)
	287-645, gnl\|panTro1\|chr19 (38322547-38322996)
	287-645, gnl\|rheMac2\|chr16 (49772121-49772563)