Non-Coding RNA Search

Tra1-TCH01H100038

Sequence:


               
               ACCCACTCGGGCGACCTCAGCGGCCGGGGAGCGTCGGGGGCCTGCGCAGCCATGCGGGCG
GCGGCGAGGGGCGCGCGAGCGGCCGCGCTGGCGCTGCTGCTGGGGGCGCTGCACGGGGCG
CCGGCACACGGCGAGGAGTACGACTACTACGGCTGGCAGACCGAGCCGCTGCACGGGCGC
TCGTACTCCAAGCCGCCCCAGTGCCTCGACATCCCCGCCGACCTGCCACTCTGCCACACC
GTGGGCTACAAGCGCATGCGGCTGCCCAACCTGCTGGAGCACGAGAGCCTGGCCGAGGTG
AAACAGCAGGCGAGCAGCTGGCTGCCGCTGCTGGCCAAGCGTTGCCACTCGGACACGCAG
GTCTTCCTCTGCTCGCTCTTCGCGCCCGTCTGCCTCGACCGGCCCATCTACCCTTGCCGC
TCGCTATGCGAGGCCGTGCGCGCCGGCTGCGCGCCGCTCATGGAGGCGTACGGCTTCCCC
TGGCCAGAGATGCTGCACTGCCACAAGTTCCCCCTGGACAACGACCTCTGCATCGCTGTG
CAGTTCGGGCACCTGCCCGCCACCGCGCCTCCAGTGACCAAGATCTGCGCCCAGTGTGAG
ATGGAGCATAGTGCCGATGGCCTCATGGAGCAGATGTGTTCCAGTGACTTCGTGGTCAAA
ATGCGCCTCAAGGAGATCAAGATAGAGAATGGGGACCGGAAGCTGATCGGAGCCCACAAA
AAGAAGAAGCTGCTCAAGCCGGGCCCCCTGAAGCGCAAGGACACCAAGAGGCTGGTGCTG
CACATGAAGAACGGTGCCGGCTGCCCCTGTCCGCAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCACTCGGGCGACCTCAGCGGCCGGGGAGCGTCGGGGGCCTGCGCAGCCATGCGGGCG
GCGGCGAGGGGCGCGCGAGCGGCCGCGCTGGCGCTGCTGCTGGGGGCGCTGCACGGGGCG
CCGGCACACGGCGAGGAGTACGACTACTACGGCTGGCAGACCGAGCCGCTGCACGGGCGC
TCGTACTCCAAGCCGCCCCAGTGCCTCGACATCCCCGCCGACCTGCCACTCTGCCACACC
GTGGGCTACAAGCGCATGCGGCTGCCCAACCTGCTGGAGCACGAGAGCCTGGCCGAGGTG
AAACAGCAGGCGAGCAGCTGGCTGCCGCTGCTGGCCAAGCGTTGCCACTCGGACACGCAG
GTCTTCCTCTGCTCGCTCTTCGCGCCCGTCTGCCTCGACCGGCCCATCTACCCTTGCCGC
TCGCTATGCGAGGCCGTGCGCGCCGGCTGCGCGCCGCTCATGGAGGCGTACGGCTTCCCC
TGGCCAGAGATGCTGCACTGCCACAAGTTCCCCCTGGACAACGACCTCTGCATCGCTGTG
CAGTTCGGGCACCTGCCCGCCACCGCGCCTCCAGTGACCAAGATCTGCGCCCAGTGTGAG
ATGGAGCATAGTGCCGATGGCCTCATGGAGCAGATGTGTTCCAGTGACTTCGTGGTCAAA
ATGCGCCTCAAGGAGATCAAGATAGAGAATGGGGACCGGAAGCTGATCGGAGCCCACAAA
AAGAAGAAGCTGCTCAAGCCGGGCCCCCTGAAGCGCAAGGACACCAAGAGGCTGGTGCTG
CACATGAAGAACGGTGCCGGCTGCCCCTGTCCGCAGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4583384|gb|AAD25051.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4583384|gb|AAD25051.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               290-403, - strand, RNAz p=0.864788

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               290-403, - strand, RNAz p=0.864788

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               210-753, gnl|bosTau2|chr17 (1400778-1400226)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-753, gnl|bosTau2|chr17 (1400778-1400226)