Non-Coding RNA Search

Tra1-TCH01H110040

Sequence:


               
               AGTACCTGCAAAGCAGTATAGAGTTTTCTTCAAAATTCCTTTAGGGGGTCACAGCAGCAA
ACTGTAAAGAAAATTTTTAGAAAGCAGCAGAATCACCAGGGAGGTAGGCTGGGTGCTGTC
TGGGACAGCTTCAGAAGAGGTGTGAGCTGAATGGAGCTGGTGAGGGGCAGACCTAGCAGG
GAGGAAAAGGGGCAAAGAGCATCTTGGAGAAGAGAGGTGTGGAGGTCAGGGGCCAAGGCC
TCGATGGGGGGGGGGGGGTCCCTTGAAGCCCAAAATGCGGGGTTTCCATGTGAGATCCCA
GAGGCAACTCAGAATAGAGCTCCCTTCACTGTCCCTGGTTCGTGTCCGGAGACCAGCACG
TCCTCGTCTCCAAGATTTGCAACAGCTGGCAGGAAATGAGCGGGTGCGTGACCTCAGGGA
GAGGCTTGTTTCCAGAGGGGTCTAAGTGTAAGCCTAGAGTGCTGGGGAGAATGCTGAGCT
TTATTGGAGGTCAGGGAAACTTAACAACAGGCAAGGCTGGGCTCCAGGGCCTGGAGCCAG
AGAAGCCCCAAAGGAACAAACAGCCACTTTGAGGTCAGGCAGCTCAGCCGGAGGCCTCCT
TGGGGAGGGATGGGGCCAGAGAAGGGCGGGCTGCCCTCCTTCACCCAGGAGTCCAGGGCC
CAGACAGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACCTGCAAAGCAGTATAGAGTTTTCTTCAAAATTCCTTTAGGGGGTCACAGCAGCAA
ACTGTAAAGAAAATTTTTAGAAAGCAGCAGAATCACCAGGGAGGTAGGCTGGGTGCTGTC
TGGGACAGCTTCAGAAGAGGTGTGAGCTGAATGGAGCTGGTGAGGGGCAGACCTAGCAGG
GAGGAAAAGGGGCAAAGAGCATCTTGGAGAAGAGAGGTGTGGAGGTCAGGGGCCAAGGCC
TCGATGGGGGGGGGGGGGTCCCTTGAAGCCCAAAATGCGGGGTTTCCATGTGAGATCCCA
GAGGCAACTCAGAATAGAGCTCCCTTCACTGTCCCTGGTTCGTGTCCGGAGACCAGCACG
TCCTCGTCTCCAAGATTTGCAACAGCTGGCAGGAAATGAGCGGGTGCGTGACCTCAGGGA
GAGGCTTGTTTCCAGAGGGGTCTAAGTGTAAGCCTAGAGTGCTGGGGAGAATGCTGAGCT
TTATTGGAGGTCAGGGAAACTTAACAACAGGCAAGGCTGGGCTCCAGGGCCTGGAGCCAG
AGAAGCCCCAAAGGAACAAACAGCCACTTTGAGGTCAGGCAGCTCAGCCGGAGGCCTCCT
TGGGGAGGGATGGGGCCAGAGAAGGGCGGGCTGCCCTCCTTCACCCAGGAGTCCAGGGCC
CAGACAGCCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               432-628, + strand, RNAz p=0.999684

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               432-628, + strand, RNAz p=0.999684

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               258-671, gnl|bosTau2|chr3 (11182426-11182840)
               

               
               258-671, gnl|Hg17|chr1 (150385288-150384306)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               258-671, gnl|bosTau2|chr3 (11182426-11182840)
               

               
               258-671, gnl|Hg17|chr1 (150385288-150384306)

	258-671, gnl\|bosTau2\|chr3 (11182426-11182840)
	258-671, gnl\|Hg17\|chr1 (150385288-150384306)