Non-Coding RNA Search

Tra1-TCH01H120016

Sequence:


               
               TACTTTTCCGACTGAGTTAAATGTTAATGAGTTTTTAGAAGCTAAGCAGTGAGGGAACTA
AACAAAGCTACCCAAATGGTACTTTGGTTGTTGCTCGCGTTCTAGACTGTAGATAGAAAG
AGTGTTAGTACATCAGTGAGGCAGCAAGCCTCTGAGCCTAGGCAGAAGGCATTATGGCCA
TAGCTGCTGAATGAAGGTCTTCCAGGAGCTGAAATAAAAGGCGTCAGCAATGAGGATACA
GAGCTTTGGGTAGTCTTAATACATTTTAAGTTCATTTGTTGAGTCTCGGTAGGCAGCCAC
TTGAAATTGAATGTAAATGCAAAGCCTTGACTATTGTACAGAGCTGCTTTTTCACTTTTT
GCCTTCTGACTCCTCTCTCCCCCTCTTCTCTAACCCGAGCTGTTAAAATAGAGGCCAAGG
GGACCTCAAGGAGGGGGAGGAATTCAAACTTCTATAGCTCTTTTAGATAGTAGTGCTCAA
GCACCGTCCAACCTGGTCGCTTGGGGAGAAAGCATAGTAGGTGGCAAGAAGACTGAAGGC
ACTGGGGACTGCAGGGTAAAGCTGTCACAGGGTGCACAGGGGCAAATTAAGAGCCTCTAG
GCCCAGGGGTTTACAGGAGCTCCGAGGTATGGGGGAGGAAGCGGCAGCAACCCTGTGGTG
AGGAGCCAAGCAAAGAAAAGCCTCCCACCACCTCAGCCCTCTTCTGCAAGCTAGCCTCTC
CCACTACCCTGTACTCCCCAGGGTCCTGGTCAAATAATGGTGTCTCCGGTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTTTCCGACTGAGTTAAATGTTAATGAGTTTTTAGAAGCTAAGCAGTGAGGGAACTA
AACAAAGCTACCCAAATGGTACTTTGGTTGTTGCTCGCGTTCTAGACTGTAGATAGAAAG
AGTGTTAGTACATCAGTGAGGCAGCAAGCCTCTGAGCCTAGGCAGAAGGCATTATGGCCA
TAGCTGCTGAATGAAGGTCTTCCAGGAGCTGAAATAAAAGGCGTCAGCAATGAGGATACA
GAGCTTTGGGTAGTCTTAATACATTTTAAGTTCATTTGTTGAGTCTCGGTAGGCAGCCAC
TTGAAATTGAATGTAAATGCAAAGCCTTGACTATTGTACAGAGCTGCTTTTTCACTTTTT
GCCTTCTGACTCCTCTCTCCCCCTCTTCTCTAACCCGAGCTGTTAAAATAGAGGCCAAGG
GGACCTCAAGGAGGGGGAGGAATTCAAACTTCTATAGCTCTTTTAGATAGTAGTGCTCAA
GCACCGTCCAACCTGGTCGCTTGGGGAGAAAGCATAGTAGGTGGCAAGAAGACTGAAGGC
ACTGGGGACTGCAGGGTAAAGCTGTCACAGGGTGCACAGGGGCAAATTAAGAGCCTCTAG
GCCCAGGGGTTTACAGGAGCTCCGAGGTATGGGGGAGGAAGCGGCAGCAACCCTGTGGTG
AGGAGCCAAGCAAAGAAAAGCCTCCCACCACCTCAGCCCTCTTCTGCAAGCTAGCCTCTC
CCACTACCCTGTACTCCCCAGGGTCCTGGTCAAATAATGGTGTCTCCGGTAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               85-229, - strand, RNAz p=0.992974
               

               
               347-454, - strand, RNAz p=0.876517

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               85-229, - strand, RNAz p=0.992974
               

               
               347-454, - strand, RNAz p=0.876517

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               11-773, gnl|bosTau2|chr4 (20807999-20807233)
               

               
               11-773, gnl|Hg17|chr7 (106698867-106698102)
               

               
               11-773, gnl|Mm7|chr12 (29557695-29558653)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-773, gnl|bosTau2|chr4 (20807999-20807233)
               

               
               11-773, gnl|Hg17|chr7 (106698867-106698102)
               

               
               11-773, gnl|Mm7|chr12 (29557695-29558653)

	85-229, - strand, RNAz p=0.992974
	347-454, - strand, RNAz p=0.876517

	11-773, gnl\|bosTau2\|chr4 (20807999-20807233)
	11-773, gnl\|Hg17\|chr7 (106698867-106698102)
	11-773, gnl\|Mm7\|chr12 (29557695-29558653)