Non-Coding RNA Search

Utr1-UTR010001B09

Sequence:


               
               ATTTCTCTGAGGAACTAAATGGTCTAGTCATTGCCTAGTGGGATATTCTCAATTTGAAAT
CATGGTGTATGGGAGGAAATAAAAAGTCTTGGACGCTGGCTAAATTACGTATCCAGACAG
AAAAGATGACCACAAATCATTCTAGCTTCAAATTTTGAATTCTTTGAGAATTAAGCCAAA
ATAAAGATAATTAAAAACACAGCATGAGACATATCCTTAAAATGTTAAATAGTTGAGTTT
GTggagttcccatcgtggctcagtggttagtgaatccaactaggagccatgaggtttggg
ctttgatccctggccttgctcaatgggttaaggatctcgagttgccgtgagctatggtgt
aggtcacagacgcggctcagatcccgcgttgctgtggctctggtgtagctgtggctacag
ctctgattagacccctagccggggaacctccatatgccATTTCTAGGGCGCGGCCCTAGG
AATGGCAAAAAAAGACCAAAAAAAAAAAAAAAAGTTTAGTTGAGTTTGTGTAGATGTAGG
GGAGAAAGGAAGCCATTTTAAATGAGAGATCCAAAAAGCAAGTGTAAATAGCATATATTT
TTAGAGAATTCATTGGAATTAAGCTTTCATGTTGGGAAAGAGTGAGAAATTAGATTGAGA
AGTATGGTTGGGTCCCAGTGTAGCAGGACCTGAACAGCCAGGCGGAGCTACTAGGCATTG
GAAGGGCAGAGCTGTGAGTGAAAGATGGTATAGATTAATTTAGTCATAGAATGCCAAACA
AATTAGAATCAGGGAAATCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCTCTGAGGAACTAAATGGTCTAGTCATTGCCTAGTGGGATATTCTCAATTTGAAAT
CATGGTGTATGGGAGGAAATAAAAAGTCTTGGACGCTGGCTAAATTACGTATCCAGACAG
AAAAGATGACCACAAATCATTCTAGCTTCAAATTTTGAATTCTTTGAGAATTAAGCCAAA
ATAAAGATAATTAAAAACACAGCATGAGACATATCCTTAAAATGTTAAATAGTTGAGTTT
GTggagttcccatcgtggctcagtggttagtgaatccaactaggagccatgaggtttggg
ctttgatccctggccttgctcaatgggttaaggatctcgagttgccgtgagctatggtgt
aggtcacagacgcggctcagatcccgcgttgctgtggctctggtgtagctgtggctacag
ctctgattagacccctagccggggaacctccatatgccATTTCTAGGGCGCGGCCCTAGG
AATGGCAAAAAAAGACCAAAAAAAAAAAAAAAAGTTTAGTTGAGTTTGTGTAGATGTAGG
GGAGAAAGGAAGCCATTTTAAATGAGAGATCCAAAAAGCAAGTGTAAATAGCATATATTT
TTAGAGAATTCATTGGAATTAAGCTTTCATGTTGGGAAAGAGTGAGAAATTAGATTGAGA
AGTATGGTTGGGTCCCAGTGTAGCAGGACCTGAACAGCCAGGCGGAGCTACTAGGCATTG
GAAGGGCAGAGCTGTGAGTGAAAGATGGTATAGATTAATTTAGTCATAGAATGCCAAACA
AATTAGAATCAGGGAAATCTGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               84-190, - strand, RNAz p=0.559117

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-190, - strand, RNAz p=0.559117

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               130-262, - strand, RNAmicro p=0.95472

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               130-262, - strand, RNAmicro p=0.95472

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               5-246, gnl|bosTau2|chr10 (54083028-54082789)
               

               
               5-246, gnl|Hg17|chr3 (114607519-114607271)
               


               
               622-795, gnl|bosTau2|chr10 (54082570-54082401)
               

               
               622-795, gnl|canFam2|chr33 (20770977-20771325)
               

               
               622-795, gnl|hg17|chr3 (114606830-114607199)
               

               
               622-795, gnl|Hg17|chr3 (114607168-114606991)
               

               
               622-795, gnl|panTro1|chr2 (116313132-116313501)
               

               
               622-795, gnl|rheMac2|chr2 (33431111-33431481)
               

               
               622-795, gnl|rn3|chr11 (57866033-57866393)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-246, gnl|bosTau2|chr10 (54083028-54082789)
               

               
               5-246, gnl|Hg17|chr3 (114607519-114607271)
               


               
               622-795, gnl|bosTau2|chr10 (54082570-54082401)
               

               
               622-795, gnl|canFam2|chr33 (20770977-20771325)
               

               
               622-795, gnl|hg17|chr3 (114606830-114607199)
               

               
               622-795, gnl|Hg17|chr3 (114607168-114606991)
               

               
               622-795, gnl|panTro1|chr2 (116313132-116313501)
               

               
               622-795, gnl|rheMac2|chr2 (33431111-33431481)
               

               
               622-795, gnl|rn3|chr11 (57866033-57866393)

	5-246, gnl\|bosTau2\|chr10 (54083028-54082789)
	5-246, gnl\|Hg17\|chr3 (114607519-114607271)

	622-795, gnl\|bosTau2\|chr10 (54082570-54082401)
	622-795, gnl\|canFam2\|chr33 (20770977-20771325)
	622-795, gnl\|hg17\|chr3 (114606830-114607199)
	622-795, gnl\|Hg17\|chr3 (114607168-114606991)
	622-795, gnl\|panTro1\|chr2 (116313132-116313501)
	622-795, gnl\|rheMac2\|chr2 (33431111-33431481)
	622-795, gnl\|rn3\|chr11 (57866033-57866393)