Non-Coding RNA Search

Utr1-UTR010008E02

Sequence:


               
               ATGGGAGCCATGggagttcccactgtggctccgtgggttaagaacccaactagtatctat
gtggatgcaggtttgatccctggccccagtcaatgggttaaagatccagtgtggctgtgg
ctgtggcataggccagcatctgcagctgcgattcAGCCTGGGACCTTCCATGTGCCACAG
GGAGCTACATCATTGAGTTGTTGGGAGGGTCTTAGCCTAGCATCCAGCAGTCGGTGAGAG
ACCGCCTGCTCCTTTCTGCTCCCTGCAGCCCAGATTGTTATTTCTCTGTGAGGGAAGAGG
GAAGTTACCCCTCTGGCACTGACAGGGAGGAGTCGTGGGTCAGTCACGGACACGCTGTGT
GGCCCTGAGGAGGCGTCTTCCCCTTTCTGAGCCCCAGCTGCTTCCTCTCTGCTGTGGGAG
GTGCTGAGGCTGAAACAAGATGCTGGCGACAAGAGCTGGGCTTGGAGCAGCCCTCAAGGG
GCATCTGCTCTTCTTCTTCCACCCCCCCCACACCCCGCCCAGAAGGTGAGGAAGGTCTGA
GCTCTCCAGTGTCCCCAGCCCCAGCCTATAGTGGCCCCGTTGCTGTAGCGGGAGCTGAGC
TGCCTGTGTTCCAGGGGACCTCATCTCCCGCCTCACCTCGGACACCACAATGGTTAGCGA
CCTGGTCTCCCAGAATATCAACATCTTCCTGCGGAACACGGTCAAGGTCACGGGCGTGGT
GGTCTTCATGTTCAGCCTCTCGTGGCAGCTCTCCTTGGTCACCTTCATGGGCTTTCCCAT
CATCATGATGGTGTCTGACATCTACGGCAAGTATTACAAGGTAGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGAGCCATGggagttcccactgtggctccgtgggttaagaacccaactagtatctat
gtggatgcaggtttgatccctggccccagtcaatgggttaaagatccagtgtggctgtgg
ctgtggcataggccagcatctgcagctgcgattcAGCCTGGGACCTTCCATGTGCCACAG
GGAGCTACATCATTGAGTTGTTGGGAGGGTCTTAGCCTAGCATCCAGCAGTCGGTGAGAG
ACCGCCTGCTCCTTTCTGCTCCCTGCAGCCCAGATTGTTATTTCTCTGTGAGGGAAGAGG
GAAGTTACCCCTCTGGCACTGACAGGGAGGAGTCGTGGGTCAGTCACGGACACGCTGTGT
GGCCCTGAGGAGGCGTCTTCCCCTTTCTGAGCCCCAGCTGCTTCCTCTCTGCTGTGGGAG
GTGCTGAGGCTGAAACAAGATGCTGGCGACAAGAGCTGGGCTTGGAGCAGCCCTCAAGGG
GCATCTGCTCTTCTTCTTCCACCCCCCCCACACCCCGCCCAGAAGGTGAGGAAGGTCTGA
GCTCTCCAGTGTCCCCAGCCCCAGCCTATAGTGGCCCCGTTGCTGTAGCGGGAGCTGAGC
TGCCTGTGTTCCAGGGGACCTCATCTCCCGCCTCACCTCGGACACCACAATGGTTAGCGA
CCTGGTCTCCCAGAATATCAACATCTTCCTGCGGAACACGGTCAAGGTCACGGGCGTGGT
GGTCTTCATGTTCAGCCTCTCGTGGCAGCTCTCCTTGGTCACCTTCATGGGCTTTCCCAT
CATCATGATGGTGTCTGACATCTACGGCAAGTATTACAAGGTAGGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61818179|ref|XP_595010.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818179|ref|XP_595010.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               388-492, - strand, RNAz p=0.686237

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               388-492, - strand, RNAz p=0.686237

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               181-827, gnl|bosTau2|chr17 (27418851-27418199)
               

               
               181-827, gnl|Hg17|chr12 (121958712-121958044)
               

               
               181-827, gnl|Mm7|chr5 (123328507-123327778)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-827, gnl|bosTau2|chr17 (27418851-27418199)
               

               
               181-827, gnl|Hg17|chr12 (121958712-121958044)
               

               
               181-827, gnl|Mm7|chr5 (123328507-123327778)

	181-827, gnl\|bosTau2\|chr17 (27418851-27418199)
	181-827, gnl\|Hg17\|chr12 (121958712-121958044)
	181-827, gnl\|Mm7\|chr5 (123328507-123327778)