Non-Coding RNA Search

Utr1-UTR010009A08

Sequence:


               
               CTATGTGTCCTGACTCACTGCCTGGAGAAGGCGCTCCTCCTCTCCCCATCCACTTCCTCT
TCTGCACCCCTGGGGCTTGGATTAGAAGCATCCAGAGACCGGGTTCAGCCCACATCTGCC
TCAGCTACATGAAGAACTCTGGGCTACTGGTACTTAAATGTCCAGCCCTCACTCACAAAG
GTTGTGGTTGTACAAGCCAACTGAAAATATCACTCAGCTGTAAATACTAACAAGCAGTAA
ATCACTCTGCAGGCCGAAGAAGCACCCACTCGGATGCAGAAAGCAGAACTCCGAGTTGAA
AAGATACCTGGTTAACAAACAGCCTGTTTAACTTAACTCTGTGCCCTTTTAACTTCCAGG
TTGTGGAATGTTTCTCCGAAATTCAAACACCTCCCCTGCCCCCCAGGAGGCCTTCTTGGC
TTATTCTCCCCTTCTTCCTCCCACTGCCCAGCTATGACTAAAGTATGCGTGGAATTTAGA
CATTTTAGCTTAAATTTTAAGTATAAGTTTAAGCTTCTTGGAGTCTTCTGTTTTTAGAGG
TGCCACATTTCTAGGATCCCAGTTGCACAGGAGGTTCACTCCACTGCCTTCAACTCCAGA
CCTTTCTTGAGTAGCCCTGCCATTGAGTGCTTTCAGATCCGTAGTTGCTGCCGTGGAGAC
TCTCGGGTCATCTGTTGTCAGGGAGTTAAGAAAGCTGAGTTGggagttcccgttgtggcg
cagtggttggcaaatccgactaggaaccatgaggttgcgggttctgtccctgcccttgct
cagtgggttaacgatccggcgttgccgtgagctg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGTGTCCTGACTCACTGCCTGGAGAAGGCGCTCCTCCTCTCCCCATCCACTTCCTCT
TCTGCACCCCTGGGGCTTGGATTAGAAGCATCCAGAGACCGGGTTCAGCCCACATCTGCC
TCAGCTACATGAAGAACTCTGGGCTACTGGTACTTAAATGTCCAGCCCTCACTCACAAAG
GTTGTGGTTGTACAAGCCAACTGAAAATATCACTCAGCTGTAAATACTAACAAGCAGTAA
ATCACTCTGCAGGCCGAAGAAGCACCCACTCGGATGCAGAAAGCAGAACTCCGAGTTGAA
AAGATACCTGGTTAACAAACAGCCTGTTTAACTTAACTCTGTGCCCTTTTAACTTCCAGG
TTGTGGAATGTTTCTCCGAAATTCAAACACCTCCCCTGCCCCCCAGGAGGCCTTCTTGGC
TTATTCTCCCCTTCTTCCTCCCACTGCCCAGCTATGACTAAAGTATGCGTGGAATTTAGA
CATTTTAGCTTAAATTTTAAGTATAAGTTTAAGCTTCTTGGAGTCTTCTGTTTTTAGAGG
TGCCACATTTCTAGGATCCCAGTTGCACAGGAGGTTCACTCCACTGCCTTCAACTCCAGA
CCTTTCTTGAGTAGCCCTGCCATTGAGTGCTTTCAGATCCGTAGTTGCTGCCGTGGAGAC
TCTCGGGTCATCTGTTGTCAGGGAGTTAAGAAAGCTGAGTTGggagttcccgttgtggcg
cagtggttggcaaatccgactaggaaccatgaggttgcgggttctgtccctgcccttgct
cagtgggttaacgatccggcgttgccgtgagctg

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               351-455, - strand, RNAz p=0.656027

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               351-455, - strand, RNAz p=0.656027

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               4-296, gnl|bosTau2|chr15 (47239094-47238794)
               

               
               4-296, gnl|Hg17|chr11 (44156476-44156798)
               

               
               4-296, gnl|Mm7|chr2 (93606306-93606013)
               


               
               321-704, gnl|bosTau2|chr15 (47238796-47238402)
               

               
               321-704, gnl|Hg17|chr11 (44156796-44157163)
               

               
               321-704, gnl|Mm7|chr2 (93606015-93605653)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-296, gnl|bosTau2|chr15 (47239094-47238794)
               

               
               4-296, gnl|Hg17|chr11 (44156476-44156798)
               

               
               4-296, gnl|Mm7|chr2 (93606306-93606013)
               


               
               321-704, gnl|bosTau2|chr15 (47238796-47238402)
               

               
               321-704, gnl|Hg17|chr11 (44156796-44157163)
               

               
               321-704, gnl|Mm7|chr2 (93606015-93605653)

	4-296, gnl\|bosTau2\|chr15 (47239094-47238794)
	4-296, gnl\|Hg17\|chr11 (44156476-44156798)
	4-296, gnl\|Mm7\|chr2 (93606306-93606013)

	321-704, gnl\|bosTau2\|chr15 (47238796-47238402)
	321-704, gnl\|Hg17\|chr11 (44156796-44157163)
	321-704, gnl\|Mm7\|chr2 (93606015-93605653)