Non-Coding RNA Search

Utr1-UTR010013F06

Sequence:


               
               TACAAGCTCAATTCCTTGATAGTTTAGGCATTCAGGGCTCATTTCCTAATAACCAAAGCG
TTTTGATTTGTCTCCTTCCCCTAGTCTACTCTTCTAAAACAAAGAAAGGGATGTGAATTA
ATTACAGGTCAGGATATAAGAGCATTTTAAAATGTGAGGCAAGTCCACACAGAAATTGGA
GCTGTAGTAGCCAAAAACAACATTTCAGGAATGAATTTGGCTGGGAGTTGAGTGCATATT
GCACAGAAATTTCATTGGTTACAAAACTTACCAAGGATTTAGCTTGAAACTATTACATTT
CTAATCCCCATATGCTTGTGCCTGGCTCAAAGTCAGTAGACAAAAATTTAGCTTTAGTTG
GCCTGAGCTCACATTCGCCCTGAGCCTTCACTTCAGTGCTGTTCAGTGCTGCTGTTTCAA
AAAGCTTCTGGggagttccagttgtggtgcagtggaaacaaatccaaccaggaaccatga
ggttgcaggtttgatccctggccttactcagtaggttagggatctggtgttgccatgagc
tgtggcatgggtcacagacgcggctcagatcccacattgctgtggttgtggcgctggctg
gcagctacagagccgattcagcgcctagcctgggagcctccatgtgctgtgggtgcAGTC
CTAAAAAAAAAAAAAGCAAAAGCTTCTGGAAGACTAGTCTTAACAGGATTAGGAAAAGAA
CTCCAGggagttcccatcatgccttagtggttaacaaagctgactagtaaccatgaagtt
gagggttcgatccctggctttgctc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAAGCTCAATTCCTTGATAGTTTAGGCATTCAGGGCTCATTTCCTAATAACCAAAGCG
TTTTGATTTGTCTCCTTCCCCTAGTCTACTCTTCTAAAACAAAGAAAGGGATGTGAATTA
ATTACAGGTCAGGATATAAGAGCATTTTAAAATGTGAGGCAAGTCCACACAGAAATTGGA
GCTGTAGTAGCCAAAAACAACATTTCAGGAATGAATTTGGCTGGGAGTTGAGTGCATATT
GCACAGAAATTTCATTGGTTACAAAACTTACCAAGGATTTAGCTTGAAACTATTACATTT
CTAATCCCCATATGCTTGTGCCTGGCTCAAAGTCAGTAGACAAAAATTTAGCTTTAGTTG
GCCTGAGCTCACATTCGCCCTGAGCCTTCACTTCAGTGCTGTTCAGTGCTGCTGTTTCAA
AAAGCTTCTGGggagttccagttgtggtgcagtggaaacaaatccaaccaggaaccatga
ggttgcaggtttgatccctggccttactcagtaggttagggatctggtgttgccatgagc
tgtggcatgggtcacagacgcggctcagatcccacattgctgtggttgtggcgctggctg
gcagctacagagccgattcagcgcctagcctgggagcctccatgtgctgtgggtgcAGTC
CTAAAAAAAAAAAAAGCAAAAGCTTCTGGAAGACTAGTCTTAACAGGATTAGGAAAAGAA
CTCCAGggagttcccatcatgccttagtggttaacaaagctgactagtaaccatgaagtt
gagggttcgatccctggctttgctc

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               120-228, + strand, RNAz p=0.922183

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-228, + strand, RNAz p=0.922183

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-432, gnl|bosTau2|chr5 (18908378-18908811)
               

               
               1-432, gnl|canFam2|chr27 (4675531-4675266)
               

               
               1-432, gnl|dasNov1|scaffold_25747 (5784-6035)
               

               
               1-432, gnl|echTel1|scaffold_281296 (43321-43591)
               

               
               1-432, gnl|hg17|chr12 (52240405-52240672)
               

               
               1-432, gnl|Hg17|chr12 (52240855-52240410)
               

               
               1-432, gnl|loxAfr1|scaffold_1915 (62470-62718)
               

               
               1-432, gnl|mm7|chr15 (102557263-102557607)
               

               
               1-432, gnl|monDom2|scaffold_463 (5205-5475)
               

               
               1-432, gnl|oryCun1|scaffold_186816 (70038-70288)
               

               
               1-432, gnl|panTro1|chr10 (53485625-53485892)
               

               
               1-432, gnl|rheMac2|chr11 (50638629-50638895)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-432, gnl|bosTau2|chr5 (18908378-18908811)
               

               
               1-432, gnl|canFam2|chr27 (4675531-4675266)
               

               
               1-432, gnl|dasNov1|scaffold_25747 (5784-6035)
               

               
               1-432, gnl|echTel1|scaffold_281296 (43321-43591)
               

               
               1-432, gnl|hg17|chr12 (52240405-52240672)
               

               
               1-432, gnl|Hg17|chr12 (52240855-52240410)
               

               
               1-432, gnl|loxAfr1|scaffold_1915 (62470-62718)
               

               
               1-432, gnl|mm7|chr15 (102557263-102557607)
               

               
               1-432, gnl|monDom2|scaffold_463 (5205-5475)
               

               
               1-432, gnl|oryCun1|scaffold_186816 (70038-70288)
               

               
               1-432, gnl|panTro1|chr10 (53485625-53485892)
               

               
               1-432, gnl|rheMac2|chr11 (50638629-50638895)

	1-432, gnl\|bosTau2\|chr5 (18908378-18908811)
	1-432, gnl\|canFam2\|chr27 (4675531-4675266)
	1-432, gnl\|dasNov1\|scaffold_25747 (5784-6035)
	1-432, gnl\|echTel1\|scaffold_281296 (43321-43591)
	1-432, gnl\|hg17\|chr12 (52240405-52240672)
	1-432, gnl\|Hg17\|chr12 (52240855-52240410)
	1-432, gnl\|loxAfr1\|scaffold_1915 (62470-62718)
	1-432, gnl\|mm7\|chr15 (102557263-102557607)
	1-432, gnl\|monDom2\|scaffold_463 (5205-5475)
	1-432, gnl\|oryCun1\|scaffold_186816 (70038-70288)
	1-432, gnl\|panTro1\|chr10 (53485625-53485892)
	1-432, gnl\|rheMac2\|chr11 (50638629-50638895)