Non-Coding RNA Search

Utr1-UTR010013F09

Sequence:


               
               TTTAGCAACTCCACTGGGGATACAGAGATGGTTTAGTCACTCTCCCTGCCCTCAAAAAGG
CTTGCAGTCTGGTGAGGGTGCCAGACAGTGAAATGGGCAATGACAGCCATAGATACAGAG
ACGGGTGCGTTGCTAATCTGGGGCAATACGGAGGCAGGGCTAGGTCGAGGGTTTTCAGAG
GAAGTGGTTCTCAGACTGAGTCTTAACTAGGCCAGCAGGCTGGGGGCTAGAATTTTGGGT
TGAGAGAGAGGTGCATGTTCATAGGCCCTGAGGCTACTATGGGGCAAGTTTGGGGAATCC
CAGTCAGTCCAGATGACGAGGATAAAGAGTGGGAGGTGGGAGGACACAGAACGAAGGCTT
AGAGTACTAAGAGCTGGATTGATCCTGAGACCATGGGCTTCATGGAGGGGCTTACATGTT
ATTCTTCCCTTAGCCTCTGTGTCAGCAAGTTGTCTGCTCAATAAATATTTGCTGAAAGAC
TAAATGACATGGAGTTCCCGAACACTATACCAGCAGCTCTCAGCCCTAGCCACACATTGG
AATCACATAGGGGAGCTTTTAAAACCAAAAATCTGGGTCCTTACCCTAAAACCAGTTTAG
TCTGAATCTCAGGATGTGGGGACTTGGTGCATTGGGATCATCTCAAAAACTCCCTGAGTG
ATTCCAGTGTGCAGCCAGGGCGGAGAATCAGGGCTGCTGGCCTCCAGAAACTGTGGAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAGCAACTCCACTGGGGATACAGAGATGGTTTAGTCACTCTCCCTGCCCTCAAAAAGG
CTTGCAGTCTGGTGAGGGTGCCAGACAGTGAAATGGGCAATGACAGCCATAGATACAGAG
ACGGGTGCGTTGCTAATCTGGGGCAATACGGAGGCAGGGCTAGGTCGAGGGTTTTCAGAG
GAAGTGGTTCTCAGACTGAGTCTTAACTAGGCCAGCAGGCTGGGGGCTAGAATTTTGGGT
TGAGAGAGAGGTGCATGTTCATAGGCCCTGAGGCTACTATGGGGCAAGTTTGGGGAATCC
CAGTCAGTCCAGATGACGAGGATAAAGAGTGGGAGGTGGGAGGACACAGAACGAAGGCTT
AGAGTACTAAGAGCTGGATTGATCCTGAGACCATGGGCTTCATGGAGGGGCTTACATGTT
ATTCTTCCCTTAGCCTCTGTGTCAGCAAGTTGTCTGCTCAATAAATATTTGCTGAAAGAC
TAAATGACATGGAGTTCCCGAACACTATACCAGCAGCTCTCAGCCCTAGCCACACATTGG
AATCACATAGGGGAGCTTTTAAAACCAAAAATCTGGGTCCTTACCCTAAAACCAGTTTAG
TCTGAATCTCAGGATGTGGGGACTTGGTGCATTGGGATCATCTCAAAAACTCCCTGAGTG
ATTCCAGTGTGCAGCCAGGGCGGAGAATCAGGGCTGCTGGCCTCCAGAAACTGTGGAGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               335-510, + strand, RNAz p=0.975434

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-510, + strand, RNAz p=0.975434

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-510, gnl|bosTau2|chr2 (82469857-82469341)
               

               
               2-510, gnl|canFam2|chr2 (78652746-78652306)
               

               
               2-510, gnl|hg17|chr1 (23792306-23792770)
               

               
               2-510, gnl|panTro1|chr1 (24170093-24170554)
               

               
               2-510, gnl|rheMac2|chr1 (26330381-26330820)
               


               
               539-702, gnl|bosTau2|chr2 (82469146-82468974)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-510, gnl|bosTau2|chr2 (82469857-82469341)
               

               
               2-510, gnl|canFam2|chr2 (78652746-78652306)
               

               
               2-510, gnl|hg17|chr1 (23792306-23792770)
               

               
               2-510, gnl|panTro1|chr1 (24170093-24170554)
               

               
               2-510, gnl|rheMac2|chr1 (26330381-26330820)
               


               
               539-702, gnl|bosTau2|chr2 (82469146-82468974)

	2-510, gnl\|bosTau2\|chr2 (82469857-82469341)
	2-510, gnl\|canFam2\|chr2 (78652746-78652306)
	2-510, gnl\|hg17\|chr1 (23792306-23792770)
	2-510, gnl\|panTro1\|chr1 (24170093-24170554)
	2-510, gnl\|rheMac2\|chr1 (26330381-26330820)

	539-702, gnl\|bosTau2\|chr2 (82469146-82468974)