Non-Coding RNA Search

Utr1-UTR010016A01

Sequence:


               
               TTAAACAATGAAATGGGAATATATGAATGAGGTGGGCCAGGGAGCATGCTGTTGATTCCA
GCCCCTCTCAATGGTAACTCCATTGAGGTAACTCCTCAGCCCCTCTGGATGTCTGCCTCT
CCCTCTCTTTCTTTATCCTCTGTTCTCTGCTTTTTCCTCTCTCTGTGGCTCATCCCTCCT
GTTCCCATGCTTCTCTTGATACTTTCTATTTGTAGGTTTGTGTTGTGGTGAATTAATAAG
GGTTTCATGAAACGGTTTAGAAATATTTGCTCAGGGCCTTGCAGAAACACACACGCATTA
ATTCTGAATGTTTTATTACCTTGTGATGACTTGCTGGTGTTACCTGCCTTCAGCGTCAAG
TGTTCCTCTTCTAGTTTTGTCCTTTCAGGAATAAGATAAGAAGGAAGCATTATTCTGGCC
ATGACCCCCAAGACAGATGAGTCACAGTGCAGAAGCAGACACAGAAGTCTTAGTCTAAGT
GGTTTCTTGTCCTTGGGAGGAAACATCTGTAACTTTCAAGGACTCCCCTACTCCAGCTGG
AGATGGAGTTCAAAGAATTAAATTCCATGCAGGCAAATCAGCAGACAGGGGCAGTCTGCC
GGCACCTGGAAACCCAGGGAAGGGGTTCTGTGGGTGAGTGAGTGCTGCCTTTGGTGGAGT
TGAGACTCCTTTTACTAGCGTGCCTGGGGACAGGCCTGTGGGCTTCCTGAGGGCAGGCAC
CAGTGGTCTTGTTCATATTTGAAATCCCATGCCCAGCCAGGCCCTGGCCATGGGNAAAAC
CAAATAATATTTTAAACAATGAAATGTGAACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAACAATGAAATGGGAATATATGAATGAGGTGGGCCAGGGAGCATGCTGTTGATTCCA
GCCCCTCTCAATGGTAACTCCATTGAGGTAACTCCTCAGCCCCTCTGGATGTCTGCCTCT
CCCTCTCTTTCTTTATCCTCTGTTCTCTGCTTTTTCCTCTCTCTGTGGCTCATCCCTCCT
GTTCCCATGCTTCTCTTGATACTTTCTATTTGTAGGTTTGTGTTGTGGTGAATTAATAAG
GGTTTCATGAAACGGTTTAGAAATATTTGCTCAGGGCCTTGCAGAAACACACACGCATTA
ATTCTGAATGTTTTATTACCTTGTGATGACTTGCTGGTGTTACCTGCCTTCAGCGTCAAG
TGTTCCTCTTCTAGTTTTGTCCTTTCAGGAATAAGATAAGAAGGAAGCATTATTCTGGCC
ATGACCCCCAAGACAGATGAGTCACAGTGCAGAAGCAGACACAGAAGTCTTAGTCTAAGT
GGTTTCTTGTCCTTGGGAGGAAACATCTGTAACTTTCAAGGACTCCCCTACTCCAGCTGG
AGATGGAGTTCAAAGAATTAAATTCCATGCAGGCAAATCAGCAGACAGGGGCAGTCTGCC
GGCACCTGGAAACCCAGGGAAGGGGTTCTGTGGGTGAGTGAGTGCTGCCTTTGGTGGAGT
TGAGACTCCTTTTACTAGCGTGCCTGGGGACAGGCCTGTGGGCTTCCTGAGGGCAGGCAC
CAGTGGTCTTGTTCATATTTGAAATCCCATGCCCAGCCAGGCCCTGGCCATGGGNAAAAC
CAAATAATATTTTAAACAATGAAATGTGAACATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               554-813, - strand, RNAz p=0.998523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               554-813, - strand, RNAz p=0.998523

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               116-813, gnl|bosTau2|chr2 (39126422-39125738)
               

               
               116-813, gnl|canFam2|chr19 (40279910-40280524)
               

               
               116-813, gnl|echTel1|scaffold_310434 (3520-4081)
               

               
               116-813, gnl|hg17|chr2 (134970326-134970941)
               

               
               116-813, gnl|Hg17|chr2 (134970418-134971057)
               

               
               116-813, gnl|loxAfr1|scaffold_1887 (70401-71091)
               

               
               116-813, gnl|mm7|chr1 (127303689-127304350)
               

               
               116-813, gnl|Mm7|chr1 (127303768-127304474)
               

               
               116-813, gnl|monDom2|scaffold_2 (19968763-19969415)
               

               
               116-813, gnl|oryCun1|scaffold_215414 (545942-546571)
               

               
               116-813, gnl|panTro1|chr13 (23968708-23969309)
               

               
               116-813, gnl|rheMac2|chr13 (117786338-117785701)
               

               
               116-813, gnl|rn3|chr13 (40092270-40092839)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-813, gnl|bosTau2|chr2 (39126422-39125738)
               

               
               116-813, gnl|canFam2|chr19 (40279910-40280524)
               

               
               116-813, gnl|echTel1|scaffold_310434 (3520-4081)
               

               
               116-813, gnl|hg17|chr2 (134970326-134970941)
               

               
               116-813, gnl|Hg17|chr2 (134970418-134971057)
               

               
               116-813, gnl|loxAfr1|scaffold_1887 (70401-71091)
               

               
               116-813, gnl|mm7|chr1 (127303689-127304350)
               

               
               116-813, gnl|Mm7|chr1 (127303768-127304474)
               

               
               116-813, gnl|monDom2|scaffold_2 (19968763-19969415)
               

               
               116-813, gnl|oryCun1|scaffold_215414 (545942-546571)
               

               
               116-813, gnl|panTro1|chr13 (23968708-23969309)
               

               
               116-813, gnl|rheMac2|chr13 (117786338-117785701)
               

               
               116-813, gnl|rn3|chr13 (40092270-40092839)

	116-813, gnl\|bosTau2\|chr2 (39126422-39125738)
	116-813, gnl\|canFam2\|chr19 (40279910-40280524)
	116-813, gnl\|echTel1\|scaffold_310434 (3520-4081)
	116-813, gnl\|hg17\|chr2 (134970326-134970941)
	116-813, gnl\|Hg17\|chr2 (134970418-134971057)
	116-813, gnl\|loxAfr1\|scaffold_1887 (70401-71091)
	116-813, gnl\|mm7\|chr1 (127303689-127304350)
	116-813, gnl\|Mm7\|chr1 (127303768-127304474)
	116-813, gnl\|monDom2\|scaffold_2 (19968763-19969415)
	116-813, gnl\|oryCun1\|scaffold_215414 (545942-546571)
	116-813, gnl\|panTro1\|chr13 (23968708-23969309)
	116-813, gnl\|rheMac2\|chr13 (117786338-117785701)
	116-813, gnl\|rn3\|chr13 (40092270-40092839)