Non-Coding RNA Search

Utr1-UTR010020F02

Sequence:


               
               CTCATCATGTGGCCAGTTTACAATGTTAGTGTTCAGTTTGGTGGCTGCGGTTGTGGAAAG
CTATATATTACTGGTCTTCAATCAGAGTCAGCCTGTGATAGTTTCCTGAAAACAGTGAGC
TGTGTAAAATTTGGTTAATAATCTCACATCCTTACATATCATTATATTATGATCTTCACA
TTAAAAAACGTATAATACAACCCCCACCATAACCCTGACTCTTCTTGCATGGCATCAAGT
GTTTTACTTAATGTTTCTAAGCAACCCACTAAAATTGGCAACACTATATTAAAAGAAAGG
GAAAATGATTACTGCTTATCAATTTAGCACAGAGTGTTCCCAAGTATTAGCTAATGAAAC
ATAAATAACAGGTTCACTGATAAATATATTTTGACTTTTTTCAGTGTATTACAATATTCT
ATATTGCAGAAAAAGCTGCCTATGATAGGCAAAGATTTGCCTGTTCTATTTATAATATCA
ATTTGAGATTTAATTAATCCTTCATCACCACAGTTATTGATTTTCTCTTTTGAATTAGAT
TTTAATAACCATCTGTGAGAACAGGCTGAAAGCCTGTCTCTGGAAACAATGCCTTGATAT
TTAGGGACATGAGAGCAGCTGTGAGCTGTTATTCTTCCTTTCTTAATAGCTGAATGTCAC
ATCCTGTAGTTTGGCTTTCATTCACTAATGTGAGGAAAGGATTCTGCCTTTCTTTCTGAC
TCAAGTTTCATTAACATAGTAGGTTAACCTTCTGCATTACTCTTCAGTCCAAGTTACCTT
TCTAACTAAAAATAAATTCCATCTGGACTTCTGGTTCTAACCTCACCCTGTAATCTTTTT
AGCTTTGGCATTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCATGTGGCCAGTTTACAATGTTAGTGTTCAGTTTGGTGGCTGCGGTTGTGGAAAG
CTATATATTACTGGTCTTCAATCAGAGTCAGCCTGTGATAGTTTCCTGAAAACAGTGAGC
TGTGTAAAATTTGGTTAATAATCTCACATCCTTACATATCATTATATTATGATCTTCACA
TTAAAAAACGTATAATACAACCCCCACCATAACCCTGACTCTTCTTGCATGGCATCAAGT
GTTTTACTTAATGTTTCTAAGCAACCCACTAAAATTGGCAACACTATATTAAAAGAAAGG
GAAAATGATTACTGCTTATCAATTTAGCACAGAGTGTTCCCAAGTATTAGCTAATGAAAC
ATAAATAACAGGTTCACTGATAAATATATTTTGACTTTTTTCAGTGTATTACAATATTCT
ATATTGCAGAAAAAGCTGCCTATGATAGGCAAAGATTTGCCTGTTCTATTTATAATATCA
ATTTGAGATTTAATTAATCCTTCATCACCACAGTTATTGATTTTCTCTTTTGAATTAGAT
TTTAATAACCATCTGTGAGAACAGGCTGAAAGCCTGTCTCTGGAAACAATGCCTTGATAT
TTAGGGACATGAGAGCAGCTGTGAGCTGTTATTCTTCCTTTCTTAATAGCTGAATGTCAC
ATCCTGTAGTTTGGCTTTCATTCACTAATGTGAGGAAAGGATTCTGCCTTTCTTTCTGAC
TCAAGTTTCATTAACATAGTAGGTTAACCTTCTGCATTACTCTTCAGTCCAAGTTACCTT
TCTAACTAAAAATAAATTCCATCTGGACTTCTGGTTCTAACCTCACCCTGTAATCTTTTT
AGCTTTGGCATTAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               521-676, + strand, RNAz p=0.929315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               521-676, + strand, RNAz p=0.929315

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               6-171, gnl|bosTau2|chr26 (5943904-5943743)
               

               
               6-171, gnl|Hg17|chr10 (93194949-93194805)
               

               
               6-171, gnl|Mm7|chr19 (36280967-36281102)
               


               
               291-854, gnl|bosTau2|chr26 (5943513-5942948)
               

               
               291-854, gnl|Hg17|chr10 (93194661-93194110)
               

               
               291-854, gnl|Mm7|chr19 (36281248-36281774)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-171, gnl|bosTau2|chr26 (5943904-5943743)
               

               
               6-171, gnl|Hg17|chr10 (93194949-93194805)
               

               
               6-171, gnl|Mm7|chr19 (36280967-36281102)
               


               
               291-854, gnl|bosTau2|chr26 (5943513-5942948)
               

               
               291-854, gnl|Hg17|chr10 (93194661-93194110)
               

               
               291-854, gnl|Mm7|chr19 (36281248-36281774)

	6-171, gnl\|bosTau2\|chr26 (5943904-5943743)
	6-171, gnl\|Hg17\|chr10 (93194949-93194805)
	6-171, gnl\|Mm7\|chr19 (36280967-36281102)

	291-854, gnl\|bosTau2\|chr26 (5943513-5942948)
	291-854, gnl\|Hg17\|chr10 (93194661-93194110)
	291-854, gnl\|Mm7\|chr19 (36281248-36281774)