Non-Coding RNA Search

Utr1-UTR010021H11

Sequence:


               
               CACTTGGGGGACAGGAGCTGTCTGCTCAGGGTAAAAAGCAAAATGACAAAGGTTGAGGTC
TCTTTCAGAGGCCACCCAAGCTGGAGTCCTGATCCAGATATCCCAAGGTCACACTGATGG
TTCTGCGGATGAAGAGAGCCCCCCACCATCCCCACCATCATCAGGCCTCCCCAGCCCCCC
AGAAATGAAGTCTGTGTTGTGGAAATTCACACACTCCAGTCATTTTCCCACCCAAGGGAC
AATTGTTTGCCTAAAGAACTCAAAAACCTGAGTTGGGGGAACTAAAGACAGATATTGGCT
GAGTCTCTAATGGTGGAGTCATCCCAGCCCAAACAGCGTGGTCACGCGTGGTCTGGTCAT
GTGTGGTGGCTCCTCTCACGGCAACAGCAGCCAGCTGCAGCCAGGAGGAGTCTGGGTGAG
AAGCGGCTGCTTAGGGGATGACAGAATCTGGCCTGTGCAAGGCAGGCCAGGGAGACCAAA
CTGAGGGCATGACCACCAACGTTTTTGAAGGGAGGCCTTCCTAAGCCTTCGACGGACGTC
TAGGAGAGATAGTAGAAGACACAGGCCAGCCCCAGCATAGCCTCAATCAAACTAAGCAGG
ATTCTGAGCACTTTGCCAACATAAACTCATTCAATCTACACAACAACCTGCTGGTATAGG
TATTTCTATTATCTTCTAAGGGGGATATATAGTTTAGAAGCTGTAAGTTATATAACTGAT
CTATGGATTAGAAACTGAGGCTCAGAGAGGGTAAATAACTTGCCCAAGGGCACACAGGTG
AGACTGGGATTTGAGTCCAGGCAATGGGGCTCCCAAGCCTGTCTTCTCAGCCACTCTGCT
AAGCTGCTGACGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTGGGGGACAGGAGCTGTCTGCTCAGGGTAAAAAGCAAAATGACAAAGGTTGAGGTC
TCTTTCAGAGGCCACCCAAGCTGGAGTCCTGATCCAGATATCCCAAGGTCACACTGATGG
TTCTGCGGATGAAGAGAGCCCCCCACCATCCCCACCATCATCAGGCCTCCCCAGCCCCCC
AGAAATGAAGTCTGTGTTGTGGAAATTCACACACTCCAGTCATTTTCCCACCCAAGGGAC
AATTGTTTGCCTAAAGAACTCAAAAACCTGAGTTGGGGGAACTAAAGACAGATATTGGCT
GAGTCTCTAATGGTGGAGTCATCCCAGCCCAAACAGCGTGGTCACGCGTGGTCTGGTCAT
GTGTGGTGGCTCCTCTCACGGCAACAGCAGCCAGCTGCAGCCAGGAGGAGTCTGGGTGAG
AAGCGGCTGCTTAGGGGATGACAGAATCTGGCCTGTGCAAGGCAGGCCAGGGAGACCAAA
CTGAGGGCATGACCACCAACGTTTTTGAAGGGAGGCCTTCCTAAGCCTTCGACGGACGTC
TAGGAGAGATAGTAGAAGACACAGGCCAGCCCCAGCATAGCCTCAATCAAACTAAGCAGG
ATTCTGAGCACTTTGCCAACATAAACTCATTCAATCTACACAACAACCTGCTGGTATAGG
TATTTCTATTATCTTCTAAGGGGGATATATAGTTTAGAAGCTGTAAGTTATATAACTGAT
CTATGGATTAGAAACTGAGGCTCAGAGAGGGTAAATAACTTGCCCAAGGGCACACAGGTG
AGACTGGGATTTGAGTCCAGGCAATGGGGCTCCCAAGCCTGTCTTCTCAGCCACTCTGCT
AAGCTGCTGACGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               380-540, - strand, RNAz p=0.928968

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               380-540, - strand, RNAz p=0.928968

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               382-488, - strand, RNAmicro p=0.938235

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               382-488, - strand, RNAmicro p=0.938235

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-853, gnl|bosTau2|chrX (23475929-23476767)
               

               
               2-853, gnl|Hg17|chrX (71080213-71081098)
               

               
               2-853, gnl|Mm7|chrX (97341936-97342790)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-853, gnl|bosTau2|chrX (23475929-23476767)
               

               
               2-853, gnl|Hg17|chrX (71080213-71081098)
               

               
               2-853, gnl|Mm7|chrX (97341936-97342790)

	2-853, gnl\|bosTau2\|chrX (23475929-23476767)
	2-853, gnl\|Hg17\|chrX (71080213-71081098)
	2-853, gnl\|Mm7\|chrX (97341936-97342790)