Non-Coding RNA Search

Utr1-UTR010022G05

Sequence:


               
               CTGGTGCCCTGCCTGGTGTTGCTAAGCCTCTACTTTTACTCCTCTGCAGGTGGGAAGAGT
GGCGGAAACAAGAAGAATGACGGCGTGAAGGTAAGGCCCGGAGAGCTGGCAGGGCCTGCC
TCCGGGGGCGCTTCCGCCCTCAGGGCCCGGCTGGCAGGGCCAGGGGCAGAGCCAGGCCTT
GCTCGCGGTGTTCTGGGCAGGTTGGTCGCCCGGGCAGACCGGCGTCCCCAGACCCAGAGA
CCCGGGCTTCCGGGCCCCCGTTCCCGCCAGGATCGGGGCAGGGGGAGGGGAGGGCTGAGG
AGCGGGGGAGAGGCAGGTGGCCTGGGGTTGGGGTGGCCCTAAGGACGGAGGCCGAAGGAG
ACTCTGTGGTTCTCCAGGGCTAGAGGGCTGGGGAGCTAGGGTGCAGAGAGGGCTGGGTGC
CGGGAGCCGTGCCTCCCTCTTCCCGAGTGGGGGCTGGCGGCCCGGGGCCCCTGACCCGAG
GCACGGCCTGTCCAGCCTACGAAGCCCACAGAGGATGGGCAGCCCAGCCTCTCGGCTTTG
ACATCCAGAGGCACCCATCCCCACGGAGGCCTGCCAGTTCAGCGCCAAGAATTCCGCCCC
TCCCCGGACCCAGGCCGCCCTGTCCCACGCCTGCTGCCCGAGCCCCTTGCTCCACACCCG
CCTGACATCCGTCCCCTCCCTCCGCTCGCCCTGCCCTCTGGGGCCTGGTCCCCGCTCTCC
GCAGCTCCCTCCTCCCCTGCCACTGGCTCGCCTTGTGGGTTCTCCTCTCTTGAGACGCTG
CCTTTTGCTGGGCTCGGACCCTGCCCAGCCAGGGCCCCAGGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTGCCCTGCCTGGTGTTGCTAAGCCTCTACTTTTACTCCTCTGCAGGTGGGAAGAGT
GGCGGAAACAAGAAGAATGACGGCGTGAAGGTAAGGCCCGGAGAGCTGGCAGGGCCTGCC
TCCGGGGGCGCTTCCGCCCTCAGGGCCCGGCTGGCAGGGCCAGGGGCAGAGCCAGGCCTT
GCTCGCGGTGTTCTGGGCAGGTTGGTCGCCCGGGCAGACCGGCGTCCCCAGACCCAGAGA
CCCGGGCTTCCGGGCCCCCGTTCCCGCCAGGATCGGGGCAGGGGGAGGGGAGGGCTGAGG
AGCGGGGGAGAGGCAGGTGGCCTGGGGTTGGGGTGGCCCTAAGGACGGAGGCCGAAGGAG
ACTCTGTGGTTCTCCAGGGCTAGAGGGCTGGGGAGCTAGGGTGCAGAGAGGGCTGGGTGC
CGGGAGCCGTGCCTCCCTCTTCCCGAGTGGGGGCTGGCGGCCCGGGGCCCCTGACCCGAG
GCACGGCCTGTCCAGCCTACGAAGCCCACAGAGGATGGGCAGCCCAGCCTCTCGGCTTTG
ACATCCAGAGGCACCCATCCCCACGGAGGCCTGCCAGTTCAGCGCCAAGAATTCCGCCCC
TCCCCGGACCCAGGCCGCCCTGTCCCACGCCTGCTGCCCGAGCCCCTTGCTCCACACCCG
CCTGACATCCGTCCCCTCCCTCCGCTCGCCCTGCCCTCTGGGGCCTGGTCCCCGCTCTCC
GCAGCTCCCTCCTCCCCTGCCACTGGCTCGCCTTGTGGGTTCTCCTCTCTTGAGACGCTG
CCTTTTGCTGGGCTCGGACCCTGCCCAGCCAGGGCCCCAGGGCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-117, + strand, RNAz p=0.869519
               

               
               452-570, - strand, RNAz p=0.966987

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.869519
               

               
               452-570, - strand, RNAz p=0.966987

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               511-628, - strand, RNAmicro p=0.999889
               

               
               447-564, + strand, RNAmicro p=0.952055

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               511-628, - strand, RNAmicro p=0.999889
               

               
               447-564, + strand, RNAmicro p=0.952055

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-680, gnl|bosTau2|chr7 (38835651-38834984)
               

               
               1-680, gnl|Hg17|chr5 (149605006-149604349)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-680, gnl|bosTau2|chr7 (38835651-38834984)
               

               
               1-680, gnl|Hg17|chr5 (149605006-149604349)

	1-117, + strand, RNAz p=0.869519
	452-570, - strand, RNAz p=0.966987

	511-628, - strand, RNAmicro p=0.999889
	447-564, + strand, RNAmicro p=0.952055

	1-680, gnl\|bosTau2\|chr7 (38835651-38834984)
	1-680, gnl\|Hg17\|chr5 (149605006-149604349)