Non-Coding RNA Search

Utr1-UTR010028D09

Sequence:


               
               Cacccactgagcaaggccagggatcaaagccacatcttcatggatgccagttaggtttgt
taccacagatctacaacgggaactccggaaaacttttttttgcttttagggctgcaccca
cgacacatggaagttcccaggctaggggtcaaatcggagctgcagttgccggcctacacc
acagccacaacagtgtgggacccgagctgcgtctacagcctacaccacagctcacagcaa
cactggctccttaacccactgagtgtggccatggatcgaacccacatcctcatggatacg
attttattaccgctgagccacgacgagaactccCGGAAAACTATTTTTCGTTGTTATAGG
AACAGCTTTAGCTCAGAGCTAACAGTAACAGACTTGGCATTTCCATTCAGGTCATTTTGG
TCAGTGCCAATGCTGTGCACCTGTTTCAGGAGGCCTCAGGATCTGCTCTCAGGTGTCCAC
GTTGGCCCAGTCTGAAGGGTTTGTGTTGGCTTCCAGAAATGCATTCAGGGCCACCTTTTG
AGTCTCTCATCAGCTTGGTCCCCATCATGGAAAGTCGAATGATTAGTGTGTGCCTGACAC
GTGCTTCTGAAAGGAGCCCGGTGGCTCCAGCCGTCCGTCCAAACTTTGATATGACAGACT
TAGGCTGAGTTCTTTCTGTGTGTCCATGCTGGGTGAGGGATACGGAGGTGAATGGGCTCA
TTCCCTGCCCTTGAAGAGGCAGACGTGTCGGTCTCTTTTCCACGGTGTGATGTGTTATAA
CAGGAGCCAGGACAGAGAGGAACGGGCGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               Cacccactgagcaaggccagggatcaaagccacatcttcatggatgccagttaggtttgt
taccacagatctacaacgggaactccggaaaacttttttttgcttttagggctgcaccca
cgacacatggaagttcccaggctaggggtcaaatcggagctgcagttgccggcctacacc
acagccacaacagtgtgggacccgagctgcgtctacagcctacaccacagctcacagcaa
cactggctccttaacccactgagtgtggccatggatcgaacccacatcctcatggatacg
attttattaccgctgagccacgacgagaactccCGGAAAACTATTTTTCGTTGTTATAGG
AACAGCTTTAGCTCAGAGCTAACAGTAACAGACTTGGCATTTCCATTCAGGTCATTTTGG
TCAGTGCCAATGCTGTGCACCTGTTTCAGGAGGCCTCAGGATCTGCTCTCAGGTGTCCAC
GTTGGCCCAGTCTGAAGGGTTTGTGTTGGCTTCCAGAAATGCATTCAGGGCCACCTTTTG
AGTCTCTCATCAGCTTGGTCCCCATCATGGAAAGTCGAATGATTAGTGTGTGCCTGACAC
GTGCTTCTGAAAGGAGCCCGGTGGCTCCAGCCGTCCGTCCAAACTTTGATATGACAGACT
TAGGCTGAGTTCTTTCTGTGTGTCCATGCTGGGTGAGGGATACGGAGGTGAATGGGCTCA
TTCCCTGCCCTTGAAGAGGCAGACGTGTCGGTCTCTTTTCCACGGTGTGATGTGTTATAA
CAGGAGCCAGGACAGAGAGGAACGGGCGCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               405-518, + strand, RNAz p=0.701266

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-518, + strand, RNAz p=0.701266

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               432-521, + strand, RNAmicro p=0.994576

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               432-521, + strand, RNAmicro p=0.994576

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               372-812, gnl|bosTau2|chr3 (70435188-70435629)
               

               
               372-812, gnl|Hg17|chr1 (45485172-45484415)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               372-812, gnl|bosTau2|chr3 (70435188-70435629)
               

               
               372-812, gnl|Hg17|chr1 (45485172-45484415)

	372-812, gnl\|bosTau2\|chr3 (70435188-70435629)
	372-812, gnl\|Hg17\|chr1 (45485172-45484415)