Non-Coding RNA Search

Utr1-UTR010030H10

Sequence:


               
               TCCCAGTGTGCATGTAGCAGAGGACCTGACTTGCTCAAAAAATGCTGTCAGAAATATATG
CCTCTATAGGTTCTAAAAGCTGCGTGGCCAGTGTGATGGAGTGAGCTGTGTACTGTTTGT
TGATCTACTCCCTAGATCTGAATTCCTTCTGAAAGCCTAGGCAGGAGGATGATACAGTCA
GACAAAGGAGCAGATCCGCTGAGCAAAAAGGACCAGAAGGACAAGAAGCTTTCTACGGCA
ACCAATCCAGAGAGTGGTATCTCCCAGATCCTGCGGCTTGTGCTGCAAGAGCTGAATCTG
TTCTACAGCCGAGACGTGAATGGAGTGTGCCTCCTGTATGACCTCCTCCACTGCCCCTGG
CTGCAGGCTCTGCTCAAGGTTTATGACTCTCTCCAGGATTTCAAAGAAAAGCAGCTCATT
CCTGCCACACCCCATGCGCAGGCCTTATCCAACGAGGTACTGAAGATATTATGTGAAACC
CCCAAGTCCCCTGAGATCCAAGAGCTGAGACAGATCCTTCAGTCTCCACACTTTAAGGTG
GGTGAGCCACAGCTTGTCCCTCAAGACATGGGACTCTGATGTGACTGGCTTAGTATCATC
GGTCATGGAGCCAAGCCTGCCATATTTATGAGGAGGCTTTCAGAACATCCCATGATGTCT
CGTTTCCCCCCTGAAAAGCCATTATTCCTCTAAAATTCTGGGGGGCCATCAAGGTAGTGT
ATGTCTTTTCCAACTGGGGAACATTTTAAGTTCTGGATAAAGGGTATGAAGGTATTTGGA
AAATACAGTATGATAATGATTAGCTCTGCAAGGGGGTATGTGAAGAGCATATGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCAGTGTGCATGTAGCAGAGGACCTGACTTGCTCAAAAAATGCTGTCAGAAATATATG
CCTCTATAGGTTCTAAAAGCTGCGTGGCCAGTGTGATGGAGTGAGCTGTGTACTGTTTGT
TGATCTACTCCCTAGATCTGAATTCCTTCTGAAAGCCTAGGCAGGAGGATGATACAGTCA
GACAAAGGAGCAGATCCGCTGAGCAAAAAGGACCAGAAGGACAAGAAGCTTTCTACGGCA
ACCAATCCAGAGAGTGGTATCTCCCAGATCCTGCGGCTTGTGCTGCAAGAGCTGAATCTG
TTCTACAGCCGAGACGTGAATGGAGTGTGCCTCCTGTATGACCTCCTCCACTGCCCCTGG
CTGCAGGCTCTGCTCAAGGTTTATGACTCTCTCCAGGATTTCAAAGAAAAGCAGCTCATT
CCTGCCACACCCCATGCGCAGGCCTTATCCAACGAGGTACTGAAGATATTATGTGAAACC
CCCAAGTCCCCTGAGATCCAAGAGCTGAGACAGATCCTTCAGTCTCCACACTTTAAGGTG
GGTGAGCCACAGCTTGTCCCTCAAGACATGGGACTCTGATGTGACTGGCTTAGTATCATC
GGTCATGGAGCCAAGCCTGCCATATTTATGAGGAGGCTTTCAGAACATCCCATGATGTCT
CGTTTCCCCCCTGAAAAGCCATTATTCCTCTAAAATTCTGGGGGGCCATCAAGGTAGTGT
ATGTCTTTTCCAACTGGGGAACATTTTAAGTTCTGGATAAAGGGTATGAAGGTATTTGGA
AAATACAGTATGATAATGATTAGCTCTGCAAGGGGGTATGTGAAGAGCATATGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61862918|ref|XP_610579.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862918|ref|XP_610579.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               648-742, + strand, RNAz p=0.533346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               648-742, + strand, RNAz p=0.533346

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-260, gnl|bosTau2|chr2 (52769743-52770009)
               

               
               1-260, gnl|Hg17|chr2 (202384343-202384101)
               

               
               1-260, gnl|Mm7|chr1 (59409972-59409740)
               


               
               538-834, gnl|bosTau2|chr2 (52775879-52776184)
               

               
               538-834, gnl|Hg17|chr2 (202377404-202377086)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-260, gnl|bosTau2|chr2 (52769743-52770009)
               

               
               1-260, gnl|Hg17|chr2 (202384343-202384101)
               

               
               1-260, gnl|Mm7|chr1 (59409972-59409740)
               


               
               538-834, gnl|bosTau2|chr2 (52775879-52776184)
               

               
               538-834, gnl|Hg17|chr2 (202377404-202377086)

	1-260, gnl\|bosTau2\|chr2 (52769743-52770009)
	1-260, gnl\|Hg17\|chr2 (202384343-202384101)
	1-260, gnl\|Mm7\|chr1 (59409972-59409740)

	538-834, gnl\|bosTau2\|chr2 (52775879-52776184)
	538-834, gnl\|Hg17\|chr2 (202377404-202377086)