Non-Coding RNA Search

Utr1-UTR010031B05

Sequence:


               
               CTGGTGAAGGAGGAGGGAGGGCAGCCAGGGAGTCCTGCCTTCTGCAGCTCTTCCCTCTCG
GCTGGGCTGGGCGCTTCCATGGCCTTCCTAGGGGGCACCCTCCCTCCCTTTCCCTTTCCC
CTTTTCTGGGACAAAGGAGCTCTTCAAGAGCTGGTACTGTCAGCTTTAAATAAGCCACGT
ACGTGTGTTATGGTACCTGAGTGGCCATCATTTCTGTATTTATCAATACCGTGGGCTTAA
TAAAAACAGCTGTCCTGAGGCGATCTGCTTAAGATGAGGAAAGAGAAACAAAACTAGTCA
TTTTTGTGCCTTCTCAAAGTCATGCCTTCGTTTTCGGCAATTCTCTTTGAGCAGCATCTA
TCTGCCCAAAATCTGGACTTTGATCTCATAACCGCAGCCTAACTTGAAGCGTCCCAGTTG
TTGCCCAGTCAGATAACGGGAGCACATGAGGATCTGATAGCATGCTCATGCTGAGCAAGC
ACCATTAACTTGCTCCCCCTTCCTTCCTCCCTCAGCACTCAGCACTCGCACAGCACCGTT
CAGCACACAAGTAAACATGAGGGCTTTTTGTAGGGTTTATGCAGAGAAGCCAGGGGGAGC
CTCTGACGGAAAGCCTCATGCACAATAGGGTATAATTTCCTTTCAGCGGAAAGCTCGCTT
TGCAAAAGCTGGATATCTGAGAACATGAACATCCCTCCCATTGTCAAAATGCTTAATTAT
TCACCTGGCACGCAAATCCAGGTTCTCGCAACCCCTCATTCCAATCCAGATGCAGACCTG
AACGGGTACCAGCAAAAATCCCTAATGGTGCAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTGAAGGAGGAGGGAGGGCAGCCAGGGAGTCCTGCCTTCTGCAGCTCTTCCCTCTCG
GCTGGGCTGGGCGCTTCCATGGCCTTCCTAGGGGGCACCCTCCCTCCCTTTCCCTTTCCC
CTTTTCTGGGACAAAGGAGCTCTTCAAGAGCTGGTACTGTCAGCTTTAAATAAGCCACGT
ACGTGTGTTATGGTACCTGAGTGGCCATCATTTCTGTATTTATCAATACCGTGGGCTTAA
TAAAAACAGCTGTCCTGAGGCGATCTGCTTAAGATGAGGAAAGAGAAACAAAACTAGTCA
TTTTTGTGCCTTCTCAAAGTCATGCCTTCGTTTTCGGCAATTCTCTTTGAGCAGCATCTA
TCTGCCCAAAATCTGGACTTTGATCTCATAACCGCAGCCTAACTTGAAGCGTCCCAGTTG
TTGCCCAGTCAGATAACGGGAGCACATGAGGATCTGATAGCATGCTCATGCTGAGCAAGC
ACCATTAACTTGCTCCCCCTTCCTTCCTCCCTCAGCACTCAGCACTCGCACAGCACCGTT
CAGCACACAAGTAAACATGAGGGCTTTTTGTAGGGTTTATGCAGAGAAGCCAGGGGGAGC
CTCTGACGGAAAGCCTCATGCACAATAGGGTATAATTTCCTTTCAGCGGAAAGCTCGCTT
TGCAAAAGCTGGATATCTGAGAACATGAACATCCCTCCCATTGTCAAAATGCTTAATTAT
TCACCTGGCACGCAAATCCAGGTTCTCGCAACCCCTCATTCCAATCCAGATGCAGACCTG
AACGGGTACCAGCAAAAATCCCTAATGGTGCAGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               565-676, - strand, RNAz p=0.562001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               565-676, - strand, RNAz p=0.562001

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               96-809, gnl|bosTau2|chr9 (19863417-19864114)
               

               
               96-809, gnl|Hg17|chr6 (112096437-112095723)
               

               
               96-809, gnl|Mm7|chr10 (39338039-39338890)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-809, gnl|bosTau2|chr9 (19863417-19864114)
               

               
               96-809, gnl|Hg17|chr6 (112096437-112095723)
               

               
               96-809, gnl|Mm7|chr10 (39338039-39338890)

	96-809, gnl\|bosTau2\|chr9 (19863417-19864114)
	96-809, gnl\|Hg17\|chr6 (112096437-112095723)
	96-809, gnl\|Mm7\|chr10 (39338039-39338890)