Non-Coding RNA Search

Utr1-UTR010031D05

Sequence:


               
               AGAGTAATAGAACCTATTGAAGGATGTTAATAAGGAGGTGACTTGTGCTGATCGATTTCT
TTCAAAGAGATCACTGTCCTTGCTGTGGAGTAGGGGTTTGACAGAAGAAGTCTGTCAGAA
GTATTCCTTAAGAGGTTGGGGCAGTAGAATTGATAAGTTGTAGACTAGGATGGTGATTGC
AGAGGTGAAGAAAAACATGGGGTTTAATGCATACTGTGGAGGTAAAACTGACTTGACTTG
CTAATAAACAGGATGAATGGTAGGGGAAAAAAAAAGAGATCAATGAATGACTCCACATTT
GGGTGCTGGGCTCTGAGTAGATACAGATGATATTTAGTGAGATGGGAAAACTGGGAAAAT
CTAGATTTGAGAGAATCAAGAGTTCTGGGAGTTTTATTTGAATTTATTAAGTATACAAAG
CCAGTTCTATATTGAAGCAAAGATGCCAAATAGGTTAGTAATATAAGAATCTAGAGATCA
GAGGAGAGTTTTGGATTGGAAATATAAATTTGTTCCTCATCAGCCTATAAAAATGGCATC
TAATGCCCCTGGCTTTGATGAGATCCCCTAAAGAGAATGCATGTAAAGCGGTCCCACGAA
TTCCCTGGTGGCTCAGCAGGTTAAGGATCCAGTATTGTCACTGCTGTGGGAACTTCCATA
TGTCTCTGTCACACCCAATACCTAGATTAAGATACTCAACTTTTCAAGACTGAGTAATGG
AATGAGACTGAGAAAGAAACAGCCAATGACATAGGATAAAGCCAGGAGAGTAAAAAGTGA
CAACAGGATCAGTACTGCTGAGTCTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTAATAGAACCTATTGAAGGATGTTAATAAGGAGGTGACTTGTGCTGATCGATTTCT
TTCAAAGAGATCACTGTCCTTGCTGTGGAGTAGGGGTTTGACAGAAGAAGTCTGTCAGAA
GTATTCCTTAAGAGGTTGGGGCAGTAGAATTGATAAGTTGTAGACTAGGATGGTGATTGC
AGAGGTGAAGAAAAACATGGGGTTTAATGCATACTGTGGAGGTAAAACTGACTTGACTTG
CTAATAAACAGGATGAATGGTAGGGGAAAAAAAAAGAGATCAATGAATGACTCCACATTT
GGGTGCTGGGCTCTGAGTAGATACAGATGATATTTAGTGAGATGGGAAAACTGGGAAAAT
CTAGATTTGAGAGAATCAAGAGTTCTGGGAGTTTTATTTGAATTTATTAAGTATACAAAG
CCAGTTCTATATTGAAGCAAAGATGCCAAATAGGTTAGTAATATAAGAATCTAGAGATCA
GAGGAGAGTTTTGGATTGGAAATATAAATTTGTTCCTCATCAGCCTATAAAAATGGCATC
TAATGCCCCTGGCTTTGATGAGATCCCCTAAAGAGAATGCATGTAAAGCGGTCCCACGAA
TTCCCTGGTGGCTCAGCAGGTTAAGGATCCAGTATTGTCACTGCTGTGGGAACTTCCATA
TGTCTCTGTCACACCCAATACCTAGATTAAGATACTCAACTTTTCAAGACTGAGTAATGG
AATGAGACTGAGAAAGAAACAGCCAATGACATAGGATAAAGCCAGGAGAGTAAAAAGTGA
CAACAGGATCAGTACTGCTGAGTCTAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               427-544, - strand, RNAz p=0.965208

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-544, - strand, RNAz p=0.965208

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               1-588, gnl|bosTau2|chr5 (53300897-53301487)
               

               
               1-588, gnl|Hg17|chr12 (24145342-24144753)
               


               
               676-812, gnl|bosTau2|chr5 (53301497-53301632)
               

               
               676-812, gnl|echTel1|scaffold_258304 (2157-2311)
               

               
               676-812, gnl|hg17|chr12 (24144544-24144738)
               

               
               676-812, gnl|Hg17|chr12 (24144743-24144592)
               

               
               676-812, gnl|panTro1|chrUn_random (50529136-50529330)
               

               
               676-812, gnl|rheMac2|chr11 (24362899-24363093)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr5 (53300897-53301487)
               

               
               1-588, gnl|Hg17|chr12 (24145342-24144753)
               


               
               676-812, gnl|bosTau2|chr5 (53301497-53301632)
               

               
               676-812, gnl|echTel1|scaffold_258304 (2157-2311)
               

               
               676-812, gnl|hg17|chr12 (24144544-24144738)
               

               
               676-812, gnl|Hg17|chr12 (24144743-24144592)
               

               
               676-812, gnl|panTro1|chrUn_random (50529136-50529330)
               

               
               676-812, gnl|rheMac2|chr11 (24362899-24363093)

	1-588, gnl\|bosTau2\|chr5 (53300897-53301487)
	1-588, gnl\|Hg17\|chr12 (24145342-24144753)

	676-812, gnl\|bosTau2\|chr5 (53301497-53301632)
	676-812, gnl\|echTel1\|scaffold_258304 (2157-2311)
	676-812, gnl\|hg17\|chr12 (24144544-24144738)
	676-812, gnl\|Hg17\|chr12 (24144743-24144592)
	676-812, gnl\|panTro1\|chrUn_random (50529136-50529330)
	676-812, gnl\|rheMac2\|chr11 (24362899-24363093)