Non-Coding RNA Search

Utr1-UTR010038B08

Sequence:


               
               GATGTTGCCTTTCTCTAATAATTCAGAGAGCACTTCAAAGCCTCACAGAGACTGTTACTT
TTGCTGTGTAATGAGCCGCCCCACGACTTCATGGCATAAAAGAACCATCATGTTATGCTC
GTGGATTTCGTGGGTTAGGAATACAGATAGGGCATAGTGGGATAGCTTTCCTCTGTGCCA
TGGTGTGTGGGCTCTGCTGGGAAGACTTCTCAGCCGGAATCATCTGGAGGTGTCTTCACT
CATGTGCCTAGCGGCTGATGCTGGCTGCCAGCCGGCCTGCTCACCTCCACATGGCCTCTC
CATGTGGTCTGGGCTTCCTCACTTCATGGTGCCTCAGGGGTAGTTGAACTTCTGATGTGG
CAGCTCTGGGTTCCAAAGGCAAGTTACCATTGCAAAGCTCTTGAATCTCTCAGTTACAGA
GAACAGGTAGCTGAATTCTTGTTGTGTTTAATAAGATACCAGATAAGAAAGAGATTGCTA
TGCTAGGCATGCTGCTTTGGGGATAATTTGGGAAGAAGAGCCTGGTGAAGGGGAAGAGCC
GGCTGTTTTGCATGAAAACAGATGACAAGGATATTCTCACTTTGGCTTGGAGCCAGTCGC
ATGATAAACAAATATTTTTCCAGCCTCTTCTTCTTGCTCAGCCCTCAGAGATGAAGCAAC
CAAGCATACTTCATGGTTAGTGGATAATTAGAGGATGTTTATATACTAGAGATGTATAAG
AACAGGTTTGggagttcctgttgtggcacagtggttaatgaatccgactaggaaccatga
ggttgcgggttcgatccctggccttgctcagtgggttgacgatccagcgttgccgtgagc
tgtgatgtaggttgcagacacggctcagatcccgcgttgct

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTTGCCTTTCTCTAATAATTCAGAGAGCACTTCAAAGCCTCACAGAGACTGTTACTT
TTGCTGTGTAATGAGCCGCCCCACGACTTCATGGCATAAAAGAACCATCATGTTATGCTC
GTGGATTTCGTGGGTTAGGAATACAGATAGGGCATAGTGGGATAGCTTTCCTCTGTGCCA
TGGTGTGTGGGCTCTGCTGGGAAGACTTCTCAGCCGGAATCATCTGGAGGTGTCTTCACT
CATGTGCCTAGCGGCTGATGCTGGCTGCCAGCCGGCCTGCTCACCTCCACATGGCCTCTC
CATGTGGTCTGGGCTTCCTCACTTCATGGTGCCTCAGGGGTAGTTGAACTTCTGATGTGG
CAGCTCTGGGTTCCAAAGGCAAGTTACCATTGCAAAGCTCTTGAATCTCTCAGTTACAGA
GAACAGGTAGCTGAATTCTTGTTGTGTTTAATAAGATACCAGATAAGAAAGAGATTGCTA
TGCTAGGCATGCTGCTTTGGGGATAATTTGGGAAGAAGAGCCTGGTGAAGGGGAAGAGCC
GGCTGTTTTGCATGAAAACAGATGACAAGGATATTCTCACTTTGGCTTGGAGCCAGTCGC
ATGATAAACAAATATTTTTCCAGCCTCTTCTTCTTGCTCAGCCCTCAGAGATGAAGCAAC
CAAGCATACTTCATGGTTAGTGGATAATTAGAGGATGTTTATATACTAGAGATGTATAAG
AACAGGTTTGggagttcctgttgtggcacagtggttaatgaatccgactaggaaccatga
ggttgcgggttcgatccctggccttgctcagtgggttgacgatccagcgttgccgtgagc
tgtgatgtaggttgcagacacggctcagatcccgcgttgct

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               202-354, + strand, RNAz p=0.999105

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-354, + strand, RNAz p=0.999105

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-361, gnl|bosTau2|chr7 (49233119-49232757)
               

               
               2-361, gnl|Hg17|chr2 (197858607-197858113)
               


               
               499-730, gnl|bosTau2|chr7 (49232754-49232524)
               

               
               499-730, gnl|Hg17|chr2 (197858110-197857882)
               

               
               499-730, gnl|Mm7|chr1 (55045928-55045725)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-361, gnl|bosTau2|chr7 (49233119-49232757)
               

               
               2-361, gnl|Hg17|chr2 (197858607-197858113)
               


               
               499-730, gnl|bosTau2|chr7 (49232754-49232524)
               

               
               499-730, gnl|Hg17|chr2 (197858110-197857882)
               

               
               499-730, gnl|Mm7|chr1 (55045928-55045725)

	2-361, gnl\|bosTau2\|chr7 (49233119-49232757)
	2-361, gnl\|Hg17\|chr2 (197858607-197858113)

	499-730, gnl\|bosTau2\|chr7 (49232754-49232524)
	499-730, gnl\|Hg17\|chr2 (197858110-197857882)
	499-730, gnl\|Mm7\|chr1 (55045928-55045725)