Non-Coding RNA Search

Utr1-UTR010039C05

Sequence:


               
               TGAGGTGTGTTCTCGGGCAGGGGAAGCGATTGCTCTCTGGCCGGCGCAGGCGGAGTAAAA
CGGACCCTTGGCCTCAGGATCCAGCTCTGGGAAGCTGGCTTTGTCTCTCAGACGCTGCCT
CGGAGGAAGGCCATGGAAGGGGAAGGGTTAAGAAACTTCAAAGAACTTCAAGCCAAATTT
CAAGAGCTTGATACACCATCTCTTCCAAGACCTATTAAATTCCCAGCAGGTGTTTCTCAA
AAGGGTGACATTGGAAGCAAACCGTCCGCAAAGACTTTGGCAAGTGGGAGACCCCTCTCA
TCCAGCCTCATTCAGCCCCCACCCAGTTGTGCCAGTGGTGACCCCCAGCCTCTTAAACAC
CAGAAAGTAAACTTGGCTCAGAAGAGCGAGATTCAGAAATGTTCTAATTCCCTAGGAACT
CTGGGAGGCCCTTCCGGTTCTGCAGTAAATTCGCAGACAGCCTCCCTGCTGTTAGATGTG
AACCAGTCAAATGCTGAGAAAAACAGTAAGAAGAAAGCAATGGTGAACAATAGCTTCCGA
GACAAGCTCTGGAACTGGGAGGTTTTATCTCAGAAAAGCGAGATGGCATCAGCCTTTCTC
CCCACCAGTTGCAGAAGCCGGGCCTCCCATCTGGAAGAGCAGAAAAGCATGGCATTTATG
CTAGAGGAGCCCAGGAAAAAGCTGGAAATAAAAGGAACCCAGACCCTCCCTTCCCAGAGG
TGCTTGATGGCCCAAAGAAGATTCTGTGCCACCTCTGAAGAGCCCACCATTCGACTTTCT
CAACATGGCAGGAAGAGCCGAGACATCCCCAGTCCAGAGAGGAGCCCAACTGAGAACACC
TGCCACCCCACCTATGACAATGAGCTCGACATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGTGTGTTCTCGGGCAGGGGAAGCGATTGCTCTCTGGCCGGCGCAGGCGGAGTAAAA
CGGACCCTTGGCCTCAGGATCCAGCTCTGGGAAGCTGGCTTTGTCTCTCAGACGCTGCCT
CGGAGGAAGGCCATGGAAGGGGAAGGGTTAAGAAACTTCAAAGAACTTCAAGCCAAATTT
CAAGAGCTTGATACACCATCTCTTCCAAGACCTATTAAATTCCCAGCAGGTGTTTCTCAA
AAGGGTGACATTGGAAGCAAACCGTCCGCAAAGACTTTGGCAAGTGGGAGACCCCTCTCA
TCCAGCCTCATTCAGCCCCCACCCAGTTGTGCCAGTGGTGACCCCCAGCCTCTTAAACAC
CAGAAAGTAAACTTGGCTCAGAAGAGCGAGATTCAGAAATGTTCTAATTCCCTAGGAACT
CTGGGAGGCCCTTCCGGTTCTGCAGTAAATTCGCAGACAGCCTCCCTGCTGTTAGATGTG
AACCAGTCAAATGCTGAGAAAAACAGTAAGAAGAAAGCAATGGTGAACAATAGCTTCCGA
GACAAGCTCTGGAACTGGGAGGTTTTATCTCAGAAAAGCGAGATGGCATCAGCCTTTCTC
CCCACCAGTTGCAGAAGCCGGGCCTCCCATCTGGAAGAGCAGAAAAGCATGGCATTTATG
CTAGAGGAGCCCAGGAAAAAGCTGGAAATAAAAGGAACCCAGACCCTCCCTTCCCAGAGG
TGCTTGATGGCCCAAAGAAGATTCTGTGCCACCTCTGAAGAGCCCACCATTCGACTTTCT
CAACATGGCAGGAAGAGCCGAGACATCCCCAGTCCAGAGAGGAGCCCAACTGAGAACACC
TGCCACCCCACCTATGACAATGAGCTCGACATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61815970|ref|XP_589114.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61815970|ref|XP_589114.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               497-733, - strand, RNAz p=0.999525

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               497-733, - strand, RNAz p=0.999525

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               141-867, gnl|bosTau2|chr3 (58942660-58941937)
               

               
               141-867, gnl|Hg17|chr1 (56970498-56969766)
               

               
               141-867, gnl|Mm7|chr4 (104321542-104322274)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-867, gnl|bosTau2|chr3 (58942660-58941937)
               

               
               141-867, gnl|Hg17|chr1 (56970498-56969766)
               

               
               141-867, gnl|Mm7|chr4 (104321542-104322274)

	141-867, gnl\|bosTau2\|chr3 (58942660-58941937)
	141-867, gnl\|Hg17\|chr1 (56970498-56969766)
	141-867, gnl\|Mm7\|chr4 (104321542-104322274)