Non-Coding RNA Search

Utr1-UTR010043A12

Sequence:


               
               TTAACAGTTGCCCCAGAGTAATCTGGGCACAGGGAGCTGAATGATGCTTTTTCGCAGGAA
CTGTTTGTTCTCTGATACACTATAGAGGCTGCAGAGTTTGGTGTCTGACTCTTGGCTGGG
CGTCCCTGGTGGCGGTGCCACCTTGGAGACTTGTGTGGGCCTTCTGCCTCCCACCCTTTC
TCAGGCTCCTGGGTTTGAACAAGGGAGGTGGTGCCATGTGGTGGGGGCCCAGCCATCTGC
CTCGTGTCACCCCATGTTCCTAAGCACATCCCTTCCTAACACCGTGGGACCTGCACCTCA
CTCTTCAGCACTGTCGCCAGGGAGACGGTGCTGCCAAGCAACCACGAGCTGGTCCTTCAT
TATTTAGGAAATGGGAGCTGATGAGAGGGAGCTCAGATTTAGTCCCAGGAACCTGCTTCC
TGCAGGGGTAAGAGCAGGGGTCCTGCCCCCACAGCCCTGGTCTGGCCCGTCCAGCCCCAG
CAGTACCTACCCGGAAAGCCTGGGCCACTGGTGGCCTTCTGCCCTCCTCCCCCGGGCTGC
TGGTGGGTGTGGAATGGAGGAGTTAGAAAGGGTGTCCTGGGCAGCCAGCTCGGGGTGCAC
CCTGGGTTCCAACCCCCCAGATCCCAGATTCCAGGGCTCGATGGCCTTGTCCCCACCCAG
CCTTGCAGCCCTGTTGCTTCCCTGCTTCTCAGTGCTGTCAGCTGTACAGGCCCCAGGGGA
AACACCATAAATCATACATCTTGGAGACAGAAGCAGATGGAGGCCGTGGGGGAAGGGGAG
GAAGCCAGGTTATGTTTGGCAGAGCAGAAAGCAGTCTGGTAAGGGAAATGTTTCTGTGTT
TAAGCTTCAAGGAATGTTAAATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACAGTTGCCCCAGAGTAATCTGGGCACAGGGAGCTGAATGATGCTTTTTCGCAGGAA
CTGTTTGTTCTCTGATACACTATAGAGGCTGCAGAGTTTGGTGTCTGACTCTTGGCTGGG
CGTCCCTGGTGGCGGTGCCACCTTGGAGACTTGTGTGGGCCTTCTGCCTCCCACCCTTTC
TCAGGCTCCTGGGTTTGAACAAGGGAGGTGGTGCCATGTGGTGGGGGCCCAGCCATCTGC
CTCGTGTCACCCCATGTTCCTAAGCACATCCCTTCCTAACACCGTGGGACCTGCACCTCA
CTCTTCAGCACTGTCGCCAGGGAGACGGTGCTGCCAAGCAACCACGAGCTGGTCCTTCAT
TATTTAGGAAATGGGAGCTGATGAGAGGGAGCTCAGATTTAGTCCCAGGAACCTGCTTCC
TGCAGGGGTAAGAGCAGGGGTCCTGCCCCCACAGCCCTGGTCTGGCCCGTCCAGCCCCAG
CAGTACCTACCCGGAAAGCCTGGGCCACTGGTGGCCTTCTGCCCTCCTCCCCCGGGCTGC
TGGTGGGTGTGGAATGGAGGAGTTAGAAAGGGTGTCCTGGGCAGCCAGCTCGGGGTGCAC
CCTGGGTTCCAACCCCCCAGATCCCAGATTCCAGGGCTCGATGGCCTTGTCCCCACCCAG
CCTTGCAGCCCTGTTGCTTCCCTGCTTCTCAGTGCTGTCAGCTGTACAGGCCCCAGGGGA
AACACCATAAATCATACATCTTGGAGACAGAAGCAGATGGAGGCCGTGGGGGAAGGGGAG
GAAGCCAGGTTATGTTTGGCAGAGCAGAAAGCAGTCTGGTAAGGGAAATGTTTCTGTGTT
TAAGCTTCAAGGAATGTTAAATGCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               249-366, - strand, RNAz p=0.89879
               

               
               726-838, - strand, RNAz p=0.555988

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-366, - strand, RNAz p=0.89879
               

               
               726-838, - strand, RNAz p=0.555988

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-865, gnl|bosTau2|chr19 (16265615-16266477)
               

               
               1-865, gnl|Hg17|chr17 (898839-897646)
               

               
               1-865, gnl|Mm7|chr11 (76532633-76531432)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-865, gnl|bosTau2|chr19 (16265615-16266477)
               

               
               1-865, gnl|Hg17|chr17 (898839-897646)
               

               
               1-865, gnl|Mm7|chr11 (76532633-76531432)

	249-366, - strand, RNAz p=0.89879
	726-838, - strand, RNAz p=0.555988

	1-865, gnl\|bosTau2\|chr19 (16265615-16266477)
	1-865, gnl\|Hg17\|chr17 (898839-897646)
	1-865, gnl\|Mm7\|chr11 (76532633-76531432)