Utr1-UTR010048D03
|
AGTTGGTAGTCGACGCTGCTTCGGCTCCCAGACTCTGGCAGGGTGACCAGCCCCGCGCAG
TGGTCCCGGGGAGCCACAGGGCAGACCCGGCCGCCGAGCACGCCCTCCACGCACACCAGA
GATGATGAGATGGACCATATGTCTAAAAACAGTAAGTGAGGAGGCTGCGGAGAAGCAATT
GAATCGAAACAAAGGCAGCAGTGGGAAGTCCCCCTCTGGCAAGGACTCCAAGACACAGAG
CTGGTGCCAGAATGGAAACCTTGGGACTCCGGTTGCTGCATAGAAAAATAAATTGAGGAA
CAAAAATAAACACCCACATCTCCATGCTGGACAGCAGAAGAGCAAGAAGAGTCTGATTCC
CATAAATGGACAGAATCTGCACAGATCTAGAAGATGGAGACAAAGAACCCATGGATCAGA
ACATCCCTCTTTGTAGAAGTCAGCAGAGCTGGGAGAGAGATGAAGATTCTGGTGAACGAC
TTCTGTGACAAAGCCAAAACAGTTTCCCAGAAATTAGCTGCATTTGGAGCTCAGAATCGA
GCACGAAGAAGTGGTCTCAGGAAGCAGGTGGAGAACCTTCTTCCAAAACAGCTCCTCATG
TGACCTTCCGTGGCCCAGGAATCCCCTTCTCTGACCTCTTTGCATCCTGAAGTCATCCTA
CTGCTGCCACTTGAAACGTTCCGAAGCTCTGAAGACATGCTTAAACATCTTCCATGGAGA
CAACTACTGTGTCCTGCCACTTATATGAGATACTTAGAGTAGAGTCACATTCATGGAGAC
AGGGGTACAACAGGGGCTGCCAGGGGCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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AGTTGGTAGTCGACGCTGCTTCGGCTCCCAGACTCTGGCAGGGTGACCAGCCCCGCGCAG
TGGTCCCGGGGAGCCACAGGGCAGACCCGGCCGCCGAGCACGCCCTCCACGCACACCAGA
GATGATGAGATGGACCATATGTCTAAAAACAGTAAGTGAGGAGGCTGCGGAGAAGCAATT
GAATCGAAACAAAGGCAGCAGTGGGAAGTCCCCCTCTGGCAAGGACTCCAAGACACAGAG
CTGGTGCCAGAATGGAAACCTTGGGACTCCGGTTGCTGCATAGAAAAATAAATTGAGGAA
CAAAAATAAACACCCACATCTCCATGCTGGACAGCAGAAGAGCAAGAAGAGTCTGATTCC
CATAAATGGACAGAATCTGCACAGATCTAGAAGATGGAGACAAAGAACCCATGGATCAGA
ACATCCCTCTTTGTAGAAGTCAGCAGAGCTGGGAGAGAGATGAAGATTCTGGTGAACGAC
TTCTGTGACAAAGCCAAAACAGTTTCCCAGAAATTAGCTGCATTTGGAGCTCAGAATCGA
GCACGAAGAAGTGGTCTCAGGAAGCAGGTGGAGAACCTTCTTCCAAAACAGCTCCTCATG
TGACCTTCCGTGGCCCAGGAATCCCCTTCTCTGACCTCTTTGCATCCTGAAGTCATCCTA
CTGCTGCCACTTGAAACGTTCCGAAGCTCTGAAGACATGCTTAAACATCTTCCATGGAGA
CAACTACTGTGTCCTGCCACTTATATGAGATACTTAGAGTAGAGTCACATTCATGGAGAC
AGGGGTACAACAGGGGCTGCCAGGGGCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
168-349, BP171098 full-length enriched swine cDNA library, adult uterus Sus
(dbj|BP171098.1|), blast E-value=0, identity=100% |
|
169-293, DA317872 BRHIP3 Homo sapiens cDNA clone BRHIP3009318 5', mRNA
(dbj|DA317872.1|), blast E-value=9e-19, identity=86.61% |
|
169-345, DB570543 RIKEN full-length enriched human cDNA library,
(dbj|DB570543.1|), blast E-value=2.99878e-43, identity=89.44% |
|
200-345, qk08a08.x1 NCI_CGAP_Kid3 Homo sapiens cDNA clone IMAGE
(gb|AI261388.1|), blast E-value=6e-32, identity=89.26% |
|
169-345, RST19204 Athersys RAGE Library Homo sapiens cDNA, mRNA sequence
(gb|BG199908.1|), blast E-value=7.00005e-41, identity=88.89% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
168-349, BP171098 full-length enriched swine cDNA library, adult uterus Sus
(dbj|BP171098.1|), blast E-value=0, identity=100% |
|
169-293, DA317872 BRHIP3 Homo sapiens cDNA clone BRHIP3009318 5', mRNA
(dbj|DA317872.1|), blast E-value=9e-19, identity=86.61% |
|
169-345, DB570543 RIKEN full-length enriched human cDNA library,
(dbj|DB570543.1|), blast E-value=2.99878e-43, identity=89.44% |
|
200-345, qk08a08.x1 NCI_CGAP_Kid3 Homo sapiens cDNA clone IMAGE
(gb|AI261388.1|), blast E-value=6e-32, identity=89.26% |
|
169-345, RST19204 Athersys RAGE Library Homo sapiens cDNA, mRNA sequence
(gb|BG199908.1|), blast E-value=7.00005e-41, identity=88.89% |
|
103-349, gnl|bosTau2|chr4 (38536448-38536704) |
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103-349, gnl|canFam2|chr14 (45018254-45018804) |
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103-349, gnl|hg17|chr7 (28822789-28823325) |
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103-349, gnl|Hg17|chr7 (28822862-28823112) |
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103-349, gnl|loxAfr1|scaffold_1419 (97902-97275) |
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103-349, gnl|mm7|chr6 (53846488-53846978) |
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103-349, gnl|Mm7|chr6 (53846547-53846790) |
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103-349, gnl|monDom2|scaffold_7 (91125356-91124789) |
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103-349, gnl|oryCun1|scaffold_174312 (127577-128062) |
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103-349, gnl|panTro1|chr6 (29957272-29957805) |
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103-349, gnl|rheMac2|chr3 (97200159-97199631) |
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103-349, gnl|rn3|chr4 (82533807-82534282) |
| |
|
350-527, gnl|bosTau2|chr4 (38540420-38540601) |
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350-527, gnl|Hg17|chr7 (28827024-28827536) |
| |
|
626-806, gnl|bosTau2|chr4 (38542345-38542522) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
103-349, gnl|bosTau2|chr4 (38536448-38536704) |
|
103-349, gnl|canFam2|chr14 (45018254-45018804) |
|
103-349, gnl|hg17|chr7 (28822789-28823325) |
|
103-349, gnl|Hg17|chr7 (28822862-28823112) |
|
103-349, gnl|loxAfr1|scaffold_1419 (97902-97275) |
|
103-349, gnl|mm7|chr6 (53846488-53846978) |
|
103-349, gnl|Mm7|chr6 (53846547-53846790) |
|
103-349, gnl|monDom2|scaffold_7 (91125356-91124789) |
|
103-349, gnl|oryCun1|scaffold_174312 (127577-128062) |
|
103-349, gnl|panTro1|chr6 (29957272-29957805) |
|
103-349, gnl|rheMac2|chr3 (97200159-97199631) |
|
103-349, gnl|rn3|chr4 (82533807-82534282) |
| |
|
350-527, gnl|bosTau2|chr4 (38540420-38540601) |
|
350-527, gnl|Hg17|chr7 (28827024-28827536) |
| |
|
626-806, gnl|bosTau2|chr4 (38542345-38542522) |
