Non-Coding RNA Search

Utr1-UTR010053F03

Sequence:


               
               TTTAAATGATTCCTTTTCTCTTTGGAGCATTTCGTAGCTGGAGTAGTTTCTGAGGCTCTC
GGAATCCTCTTCTCTCAGCTCCCTTCTTCAGAGCTAGAGGCTGTGGTTGGCTCTCTTTAA
ACCCATGGCATTGATGCTTCTCTTTCCTCTCCTCTGTTTCCTGATGGGCAAGCCCTGGTG
CTCACCTCACCCGTGTTTTATCTGCCTGCCTGGGGTTGCTGCAGAGAAGCACTTGTGCCC
TTTCTGGCTATGCTCTGAAAAGGAACACCAACAGCCAGAGCTCCATCGCGGCCCAGCAGG
CTGGGGAAGATCTTCTCATCCTCCTTGTTGCTGGGTTCAAAGTGCACTTCGCATTTTATG
GGGGTGATCAGCCCTCCCAAGGTGCTGGTTTGCGTGGGGCTGTGTTGGAGCCTGGTGGAC
AGTTAAGCATGCTGGCCTCTTTTGGCCTTTGCCTTTTTGGCTGAGTGGCCGTTGTTCCTG
CTCTGAGTGAGAAGGGGCTGCTGCTCCTTTGAGCAGAGCACCAGGCAGGGGTGAGGAAAC
AGTTCATCTTGTTCAAAGGGGATGGCTCTGAAGCATGAAGATTGAACTGATTGTGACCCC
ACCCGAGGGGGGGGGAAGCAGAAGCGCCCTCTGGAGAACAGGCTGGGAGGAGGAAGCTGG
CAATTACTAATCCCATCGGCCTTTGGGGTCCTCAGGGTCTCATATCCGTTGAAAAGAGAG
AGAAGTGGGGGTTGAAGGTAATAAAATAGGCCTTAAATTAGAGGAACAGGGGGTCATTTT
ATCTAATTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAATGATTCCTTTTCTCTTTGGAGCATTTCGTAGCTGGAGTAGTTTCTGAGGCTCTC
GGAATCCTCTTCTCTCAGCTCCCTTCTTCAGAGCTAGAGGCTGTGGTTGGCTCTCTTTAA
ACCCATGGCATTGATGCTTCTCTTTCCTCTCCTCTGTTTCCTGATGGGCAAGCCCTGGTG
CTCACCTCACCCGTGTTTTATCTGCCTGCCTGGGGTTGCTGCAGAGAAGCACTTGTGCCC
TTTCTGGCTATGCTCTGAAAAGGAACACCAACAGCCAGAGCTCCATCGCGGCCCAGCAGG
CTGGGGAAGATCTTCTCATCCTCCTTGTTGCTGGGTTCAAAGTGCACTTCGCATTTTATG
GGGGTGATCAGCCCTCCCAAGGTGCTGGTTTGCGTGGGGCTGTGTTGGAGCCTGGTGGAC
AGTTAAGCATGCTGGCCTCTTTTGGCCTTTGCCTTTTTGGCTGAGTGGCCGTTGTTCCTG
CTCTGAGTGAGAAGGGGCTGCTGCTCCTTTGAGCAGAGCACCAGGCAGGGGTGAGGAAAC
AGTTCATCTTGTTCAAAGGGGATGGCTCTGAAGCATGAAGATTGAACTGATTGTGACCCC
ACCCGAGGGGGGGGGAAGCAGAAGCGCCCTCTGGAGAACAGGCTGGGAGGAGGAAGCTGG
CAATTACTAATCCCATCGGCCTTTGGGGTCCTCAGGGTCTCATATCCGTTGAAAAGAGAG
AGAAGTGGGGGTTGAAGGTAATAAAATAGGCCTTAAATTAGAGGAACAGGGGGTCATTTT
ATCTAATTTTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               296-414, - strand, RNAz p=0.848383
               

               
               454-613, - strand, RNAz p=0.999512
               

               
               491-690, + strand, RNAz p=0.995639

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-414, - strand, RNAz p=0.848383
               

               
               454-613, - strand, RNAz p=0.999512
               

               
               491-690, + strand, RNAz p=0.995639

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               25-791, gnl|bosTau2|chr10 (3755495-3754736)
               

               
               25-791, gnl|canFam2|chr3 (31032349-31031724)
               

               
               25-791, gnl|dasNov1|scaffold_5297 (82337-81714)
               

               
               25-791, gnl|echTel1|scaffold_301906 (939-1548)
               

               
               25-791, gnl|hg17|chr5 (77959772-77960399)
               

               
               25-791, gnl|Hg17|chr5 (77960594-77959832)
               

               
               25-791, gnl|loxAfr1|scaffold_151888 (1020-396)
               

               
               25-791, gnl|mm7|chr13 (91132896-91132290)
               

               
               25-791, gnl|Mm7|chr13 (91132128-91132838)
               

               
               25-791, gnl|monDom2|scaffold_27 (37610997-37610274)
               

               
               25-791, gnl|panTro1|chr4 (37257298-37256671)
               

               
               25-791, gnl|rheMac2|chr6 (74882050-74882677)
               

               
               25-791, gnl|rn3|chr2 (24282925-24282320)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-791, gnl|bosTau2|chr10 (3755495-3754736)
               

               
               25-791, gnl|canFam2|chr3 (31032349-31031724)
               

               
               25-791, gnl|dasNov1|scaffold_5297 (82337-81714)
               

               
               25-791, gnl|echTel1|scaffold_301906 (939-1548)
               

               
               25-791, gnl|hg17|chr5 (77959772-77960399)
               

               
               25-791, gnl|Hg17|chr5 (77960594-77959832)
               

               
               25-791, gnl|loxAfr1|scaffold_151888 (1020-396)
               

               
               25-791, gnl|mm7|chr13 (91132896-91132290)
               

               
               25-791, gnl|Mm7|chr13 (91132128-91132838)
               

               
               25-791, gnl|monDom2|scaffold_27 (37610997-37610274)
               

               
               25-791, gnl|panTro1|chr4 (37257298-37256671)
               

               
               25-791, gnl|rheMac2|chr6 (74882050-74882677)
               

               
               25-791, gnl|rn3|chr2 (24282925-24282320)

	296-414, - strand, RNAz p=0.848383
	454-613, - strand, RNAz p=0.999512
	491-690, + strand, RNAz p=0.995639

	25-791, gnl\|bosTau2\|chr10 (3755495-3754736)
	25-791, gnl\|canFam2\|chr3 (31032349-31031724)
	25-791, gnl\|dasNov1\|scaffold_5297 (82337-81714)
	25-791, gnl\|echTel1\|scaffold_301906 (939-1548)
	25-791, gnl\|hg17\|chr5 (77959772-77960399)
	25-791, gnl\|Hg17\|chr5 (77960594-77959832)
	25-791, gnl\|loxAfr1\|scaffold_151888 (1020-396)
	25-791, gnl\|mm7\|chr13 (91132896-91132290)
	25-791, gnl\|Mm7\|chr13 (91132128-91132838)
	25-791, gnl\|monDom2\|scaffold_27 (37610997-37610274)
	25-791, gnl\|panTro1\|chr4 (37257298-37256671)
	25-791, gnl\|rheMac2\|chr6 (74882050-74882677)
	25-791, gnl\|rn3\|chr2 (24282925-24282320)