Non-Coding RNA Search

Utr1-UTR010059F05

Sequence:


               
               AGAGCTGGGATGGCTAGAAGCCACAAAGAGGAGGATGGTAGCGCAGCCTAAATAAGAATT
CTGCACACCCATTTATTTACTCATTCAGGAAGTCAATGTTAAATGCCTTCTTCACACCAG
ACACTGGCTTAGGCACCACCGATGGAGTCATGAGAAGGGTTCCACCCCTCCTGCTAGTGG
AAGAGAACGAGGCAGGCAAATAGTTGTCATAAGTGTAGAAAGTGCTGACCAGGGCCCCTC
TGTGTGACCAGGGAGGAGCATGGGGTGGTGGCTGGGGGTTCAGAGGAAGGTCAGGCTGGG
CAGCGGAGTCGAAAATGCTCGGCGGGGCTCCTCCACCTTCTGAAAACCGAGAACCTATTT
GGCCTAAAGAAATGAGGCTTAAAAAGGTACTTGAGCCTCAGTTATCAGGTACATTTTCTG
GATGACTAGGCCATGTAGATACAGCCTTAATAAAAATGATGGCTGATAGATGGGTGGTGC
TTTATCATTTACAGAGCGCATTTAATCCTCACAACAGCCTTGCCAAAATCGTCCTGTTAT
CCCTGTTTTATAGTTGGGCTAACTGAGGCTCAGAGCAGTGAGCCTTGACTTAGGTCACAT
GATTATGATAAAGATGGAGCCGGGGCCAGAACCAAGTTCACAAGTCCCAGTCCAGCATGC
ACACCCTGCCCAGGGCTGCCAGATACTCAGCCACGCTGATTGCAATCTGCTCTGACCCAC
GCACAGAAGTACTTTGGGGCCAGGGCTTGGGTCTCTTGTGAAATGCTTCATAACCTATGG
CCCCTCTCCTGATTTCTGGGAACATTCCCCAGTCTGCTTCCCACAAAAATAATCTGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCTGGGATGGCTAGAAGCCACAAAGAGGAGGATGGTAGCGCAGCCTAAATAAGAATT
CTGCACACCCATTTATTTACTCATTCAGGAAGTCAATGTTAAATGCCTTCTTCACACCAG
ACACTGGCTTAGGCACCACCGATGGAGTCATGAGAAGGGTTCCACCCCTCCTGCTAGTGG
AAGAGAACGAGGCAGGCAAATAGTTGTCATAAGTGTAGAAAGTGCTGACCAGGGCCCCTC
TGTGTGACCAGGGAGGAGCATGGGGTGGTGGCTGGGGGTTCAGAGGAAGGTCAGGCTGGG
CAGCGGAGTCGAAAATGCTCGGCGGGGCTCCTCCACCTTCTGAAAACCGAGAACCTATTT
GGCCTAAAGAAATGAGGCTTAAAAAGGTACTTGAGCCTCAGTTATCAGGTACATTTTCTG
GATGACTAGGCCATGTAGATACAGCCTTAATAAAAATGATGGCTGATAGATGGGTGGTGC
TTTATCATTTACAGAGCGCATTTAATCCTCACAACAGCCTTGCCAAAATCGTCCTGTTAT
CCCTGTTTTATAGTTGGGCTAACTGAGGCTCAGAGCAGTGAGCCTTGACTTAGGTCACAT
GATTATGATAAAGATGGAGCCGGGGCCAGAACCAAGTTCACAAGTCCCAGTCCAGCATGC
ACACCCTGCCCAGGGCTGCCAGATACTCAGCCACGCTGATTGCAATCTGCTCTGACCCAC
GCACAGAAGTACTTTGGGGCCAGGGCTTGGGTCTCTTGTGAAATGCTTCATAACCTATGG
CCCCTCTCCTGATTTCTGGGAACATTCCCCAGTCTGCTTCCCACAAAAATAATCTGCTCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               90-208, - strand, RNAz p=0.783051
               

               
               246-485, + strand, RNAz p=0.96801

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-208, - strand, RNAz p=0.783051
               

               
               246-485, + strand, RNAz p=0.96801

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               270-368, + strand, RNAmicro p=0.999301
               

               
               316-424, - strand, RNAmicro p=0.999188

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               270-368, + strand, RNAmicro p=0.999301
               

               
               316-424, - strand, RNAmicro p=0.999188

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               90-840, gnl|bosTau2|chr3 (5244745-5243998)
               

               
               90-840, gnl|Hg17|chr1 (154830083-154830814)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-840, gnl|bosTau2|chr3 (5244745-5243998)
               

               
               90-840, gnl|Hg17|chr1 (154830083-154830814)

	90-208, - strand, RNAz p=0.783051
	246-485, + strand, RNAz p=0.96801

	270-368, + strand, RNAmicro p=0.999301
	316-424, - strand, RNAmicro p=0.999188

	90-840, gnl\|bosTau2\|chr3 (5244745-5243998)
	90-840, gnl\|Hg17\|chr1 (154830083-154830814)