Non-Coding RNA Search

Utr1-UTR010059F07

Sequence:


               
               AATCCAGTCCCCAGCAACCTTGAGAATACTCGAGAATTTTTTTTCCCCTCCAAACTGAAA
GGTCCGCTCAGCCATAAAAAAAGAAAAGTTGTTTTGCCAGCTTCATTAGTGTTCACCTAA
TTAGCTGTAAACCTGATGGATTCCTGACAGCTTTAATGATTGGAGATGACAAGCTCGACG
CAGTGTCATCCAGCAGAATTAGGTTTGCAGCTAGTTTGATGTAATCAAGTTGATATTACA
CAGTCCTGGCTGCCTTTAGTTGTGCATTAACTCAATTTTCTGCTGCAGGTGACAAATGGG
CTTTGGTACCTGGATAATCATGTCATAGGAATTAGGGCCCTTTTAATGGTCTGGGGTAGA
ATAACAACCACAAAGGGCTGAGAGCTGGGGAGACGGTGCAGACATAGCACACAGGTGCAC
ACAGTTTTTATATCTAGGCCAAATGTAACACTGCTCTCCAGAAGGCCAAAGCAGGCTCCA
AGAATCCCTGAAAAGACGTATTTCTGTTCTTTGGGATTTTCTGGTTTTGATAGAAATTAT
GCATGGCTTAGTGTCTTTTTTCGAAGAGAGAAGAGAAATTTCTTTACCTGCCAAAGAGAA
ACCTGGGCAGGAGTTTCCTTTCTCCAGGCGTGTAATTTCCAGGGGCGGTGCATTTGTGCT
AGACAGATGTTGTTGCCTGTAGAAGCTCAGAGGAGTGGGGTTACAGAGGCCAGTATCCTT
CGGGCAAAACCACCATTATTCCTTTCTTAAAATACGACTCTCTTCTGTGCCTAGCATTTG
TTGGTAAACAAGTATTTTTTGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCAGTCCCCAGCAACCTTGAGAATACTCGAGAATTTTTTTTCCCCTCCAAACTGAAA
GGTCCGCTCAGCCATAAAAAAAGAAAAGTTGTTTTGCCAGCTTCATTAGTGTTCACCTAA
TTAGCTGTAAACCTGATGGATTCCTGACAGCTTTAATGATTGGAGATGACAAGCTCGACG
CAGTGTCATCCAGCAGAATTAGGTTTGCAGCTAGTTTGATGTAATCAAGTTGATATTACA
CAGTCCTGGCTGCCTTTAGTTGTGCATTAACTCAATTTTCTGCTGCAGGTGACAAATGGG
CTTTGGTACCTGGATAATCATGTCATAGGAATTAGGGCCCTTTTAATGGTCTGGGGTAGA
ATAACAACCACAAAGGGCTGAGAGCTGGGGAGACGGTGCAGACATAGCACACAGGTGCAC
ACAGTTTTTATATCTAGGCCAAATGTAACACTGCTCTCCAGAAGGCCAAAGCAGGCTCCA
AGAATCCCTGAAAAGACGTATTTCTGTTCTTTGGGATTTTCTGGTTTTGATAGAAATTAT
GCATGGCTTAGTGTCTTTTTTCGAAGAGAGAAGAGAAATTTCTTTACCTGCCAAAGAGAA
ACCTGGGCAGGAGTTTCCTTTCTCCAGGCGTGTAATTTCCAGGGGCGGTGCATTTGTGCT
AGACAGATGTTGTTGCCTGTAGAAGCTCAGAGGAGTGGGGTTACAGAGGCCAGTATCCTT
CGGGCAAAACCACCATTATTCCTTTCTTAAAATACGACTCTCTTCTGTGCCTAGCATTTG
TTGGTAAACAAGTATTTTTTGAGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               111-390, - strand, RNAz p=0.954397
               

               
               511-612, + strand, RNAz p=0.554291

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-390, - strand, RNAz p=0.954397
               

               
               511-612, + strand, RNAz p=0.554291

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               202-377, + strand, RNAmicro p=0.996434

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               202-377, + strand, RNAmicro p=0.996434

Similar Transcript(s): 4 entry(ies)

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Similar Transcript(s): 4 entry(ies)

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               111-390, BP464261 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP464261.1|), blast E-value=0, identity=100% 
               

               
               111-299, CT675968 ZF_mu Danio rerio cDNA clone ZF_mu_204b02 5', mRNA 
(emb|CT675968.2|), blast E-value=0, identity=91.58% 
               

               
               111-299, CT675969 ZF_mu Danio rerio cDNA clone ZF_mu_204b02 3', mRNA 
(emb|CT675969.2|), blast E-value=0, identity=91.58% 
               

               
               225-390, BE04008B1C10 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN436204.1|), blast E-value=0, identity=98.8%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               111-390, BP464261 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP464261.1|), blast E-value=0, identity=100% 
               

               
               111-299, CT675968 ZF_mu Danio rerio cDNA clone ZF_mu_204b02 5', mRNA 
(emb|CT675968.2|), blast E-value=0, identity=91.58% 
               

               
               111-299, CT675969 ZF_mu Danio rerio cDNA clone ZF_mu_204b02 3', mRNA 
(emb|CT675969.2|), blast E-value=0, identity=91.58% 
               

               
               225-390, BE04008B1C10 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN436204.1|), blast E-value=0, identity=98.8%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-747, gnl|bosTau2|chr18 (34846535-34847279)
               

               
               1-747, gnl|Hg17|chr19 (36529350-36528605)
               

               
               1-747, gnl|Mm7|chr7 (33591903-33592670)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-747, gnl|bosTau2|chr18 (34846535-34847279)
               

               
               1-747, gnl|Hg17|chr19 (36529350-36528605)
               

               
               1-747, gnl|Mm7|chr7 (33591903-33592670)

	111-390, - strand, RNAz p=0.954397
	511-612, + strand, RNAz p=0.554291

	111-390, BP464261 full-length enriched swine cDNA library, adult uterus Sus (dbj\|BP464261.1\|), blast E-value=0, identity=100%
	111-299, CT675968 ZF_mu Danio rerio cDNA clone ZF_mu_204b02 5', mRNA (emb\|CT675968.2\|), blast E-value=0, identity=91.58%
	111-299, CT675969 ZF_mu Danio rerio cDNA clone ZF_mu_204b02 3', mRNA (emb\|CT675969.2\|), blast E-value=0, identity=91.58%
	225-390, BE04008B1C10 BE04 Normalized and Subtracted bovine embryonic and (gb\|CN436204.1\|), blast E-value=0, identity=98.8%

	1-747, gnl\|bosTau2\|chr18 (34846535-34847279)
	1-747, gnl\|Hg17\|chr19 (36529350-36528605)
	1-747, gnl\|Mm7\|chr7 (33591903-33592670)