Non-Coding RNA Search

Utr1-UTR010062D03

Sequence:


               
               CACGAGCATGGCGGAGACGGAGAGTATGGACGTCGCTGAGCCTGTGTCTCCGGTGGAGGT
CCCGAAGACGGGCGCCGGGCCTGCCGACCGTCATGGTCTGCTGAAGCACAGCCGCGAGTT
CTTGGACTTCTTCTGGGACATTGCGAAGCCGCAGCAGGAGACGCGGCTTGAGGCCACGGA
GAAGCTGCTGGAGTATCTGCGCGCAAGGCCAAAGGGATCGTCCGAGATGAAGTACGCCCT
GAAGCGCCTAATCACCGGGCTCGGGGTCGGACGTGAAACAGCCCGGCCCTGCTACAGTCT
GGCCCTAGCACAGCTGTTACAGTCTTTTGAAGACATCCCTCTCTGCAGCATCTTGCAGCA
GATACAGGAGAAGTATAACTTGCAGAAGGTGAAGAAGGTGAGGATTAGTGGCCCCAGGGA
AGTCGGCAGCCCCGGGGTGGGGAGCGCTTGGGCCCTTCTCACCAGTGCCTGGAATCCTTT
TCCAGGGGATGATGAGACCAGCTCTCTTTGCAAACCTGTTTGGGGTGCTAGCCCTCTTTC
AGTCAGGCAGGCTGGTGAAGGTAAGAGCCTTGGGGATCCCAGGGCGCATGTGGACTAGCT
TGGGAGTTGGAGGAGTGGCAGAGCCCTGTTGACACCCTGTCCCCTTCTGGGGGGGTCCCA
GGACTCGGAGGTGCTGATGAAGTCAGTGAAGCTGCTGCAAGTCCTGGCTCAGCACTACAA
CCACCTGCAGGAGCAGCCCCCAGAAGGCCCTGGTGGACATCTTTTCTGAGGTACTGGCTC
ACCAGCTTTGGGGCCTCTGATAGCGCAGCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGAGCATGGCGGAGACGGAGAGTATGGACGTCGCTGAGCCTGTGTCTCCGGTGGAGGT
CCCGAAGACGGGCGCCGGGCCTGCCGACCGTCATGGTCTGCTGAAGCACAGCCGCGAGTT
CTTGGACTTCTTCTGGGACATTGCGAAGCCGCAGCAGGAGACGCGGCTTGAGGCCACGGA
GAAGCTGCTGGAGTATCTGCGCGCAAGGCCAAAGGGATCGTCCGAGATGAAGTACGCCCT
GAAGCGCCTAATCACCGGGCTCGGGGTCGGACGTGAAACAGCCCGGCCCTGCTACAGTCT
GGCCCTAGCACAGCTGTTACAGTCTTTTGAAGACATCCCTCTCTGCAGCATCTTGCAGCA
GATACAGGAGAAGTATAACTTGCAGAAGGTGAAGAAGGTGAGGATTAGTGGCCCCAGGGA
AGTCGGCAGCCCCGGGGTGGGGAGCGCTTGGGCCCTTCTCACCAGTGCCTGGAATCCTTT
TCCAGGGGATGATGAGACCAGCTCTCTTTGCAAACCTGTTTGGGGTGCTAGCCCTCTTTC
AGTCAGGCAGGCTGGTGAAGGTAAGAGCCTTGGGGATCCCAGGGCGCATGTGGACTAGCT
TGGGAGTTGGAGGAGTGGCAGAGCCCTGTTGACACCCTGTCCCCTTCTGGGGGGGTCCCA
GGACTCGGAGGTGCTGATGAAGTCAGTGAAGCTGCTGCAAGTCCTGGCTCAGCACTACAA
CCACCTGCAGGAGCAGCCCCCAGAAGGCCCTGGTGGACATCTTTTCTGAGGTACTGGCTC
ACCAGCTTTGGGGCCTCTGATAGCGCAGCCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               390-573, + strand, RNAz p=0.719318

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-573, + strand, RNAz p=0.719318

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-221, gnl|bosTau2|chr19 (19605960-19605741)
               

               
               2-221, gnl|Hg17|chr17 (4405383-4405164)
               

               
               2-221, gnl|Mm7|chr11 (72522951-72523156)
               


               
               311-796, gnl|bosTau2|chr19 (19604761-19604276)
               

               
               311-796, gnl|Hg17|chr17 (4404325-4403828)
               

               
               311-796, gnl|Mm7|chr11 (72523971-72524447)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-221, gnl|bosTau2|chr19 (19605960-19605741)
               

               
               2-221, gnl|Hg17|chr17 (4405383-4405164)
               

               
               2-221, gnl|Mm7|chr11 (72522951-72523156)
               


               
               311-796, gnl|bosTau2|chr19 (19604761-19604276)
               

               
               311-796, gnl|Hg17|chr17 (4404325-4403828)
               

               
               311-796, gnl|Mm7|chr11 (72523971-72524447)

	2-221, gnl\|bosTau2\|chr19 (19605960-19605741)
	2-221, gnl\|Hg17\|chr17 (4405383-4405164)
	2-221, gnl\|Mm7\|chr11 (72522951-72523156)

	311-796, gnl\|bosTau2\|chr19 (19604761-19604276)
	311-796, gnl\|Hg17\|chr17 (4404325-4403828)
	311-796, gnl\|Mm7\|chr11 (72523971-72524447)