Non-Coding RNA Search

Utr1-UTR010062H09

Sequence:


               
               CATGGCTTCCAAAGCCAATGGGCCGTTGGTTTTCAATGATCTTTGCATTGCTTTCCTCCA
CAAGGAGAGGAAATTGCAAGAGAAGGAAAAGTCTTCAGCTCCTTTATCTTGCCCTTTCCC
GCCTCACATCCTTAATTAAGAACCATCTGGCCTTGGAACCACTGTATACACACCACAAGG
CTATTTTTAACCTGAATTCTCATTGTTCCTGAACCCTTGGCTTGGGTCATCTTCGTTGGG
AAGATCCCCTCCCACTGGGTTCCCCTAAGTGAACCTTCCTCTGCTGGAGCCCGGCTGTCA
CATGGAGACCAGCACCAGCCTGCTGGGAGGCGACCCGCTCTTAGATACCCACATCTGAAG
AAGGGCGCCCTCCCACCCATCTTCTCAGCCATGCCCCCTTTACTCAAAGGTGGCAGGTGC
CTGTACACCTGAAGCAAATGGAACTTTTCCAGAGGTCCTCCAGCTTCTAGTCCCCATCCC
CCACCTCCTTGGTTGGAAGTTGAAAATATAGTTGGTTTCCATAGTAATGGCAGCTCAGGC
AAAGCAGAGAAATTAAATCCCTAGGTCAGTCCAAAGCTTTAACTTTTCCACCAACACCCC
CACATGAAAAAAAAAAAAAAAAAAAAACAAAAAACAGCTCACAAGTAACATTACCAGCCA
CCAACTTTGAATGTGAGCTTCTCGCTTTGACCTTCGCTGTGGTCCCTGTAAATAGTAAAT
AACAGAGGGGTAATGGGGGAGAGGGGCTTGGGTGATGTGGTTTGGATCAGCATGCATTTA
TTTAGCATCATCAGGTGCCCAGCTTTTCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGCTTCCAAAGCCAATGGGCCGTTGGTTTTCAATGATCTTTGCATTGCTTTCCTCCA
CAAGGAGAGGAAATTGCAAGAGAAGGAAAAGTCTTCAGCTCCTTTATCTTGCCCTTTCCC
GCCTCACATCCTTAATTAAGAACCATCTGGCCTTGGAACCACTGTATACACACCACAAGG
CTATTTTTAACCTGAATTCTCATTGTTCCTGAACCCTTGGCTTGGGTCATCTTCGTTGGG
AAGATCCCCTCCCACTGGGTTCCCCTAAGTGAACCTTCCTCTGCTGGAGCCCGGCTGTCA
CATGGAGACCAGCACCAGCCTGCTGGGAGGCGACCCGCTCTTAGATACCCACATCTGAAG
AAGGGCGCCCTCCCACCCATCTTCTCAGCCATGCCCCCTTTACTCAAAGGTGGCAGGTGC
CTGTACACCTGAAGCAAATGGAACTTTTCCAGAGGTCCTCCAGCTTCTAGTCCCCATCCC
CCACCTCCTTGGTTGGAAGTTGAAAATATAGTTGGTTTCCATAGTAATGGCAGCTCAGGC
AAAGCAGAGAAATTAAATCCCTAGGTCAGTCCAAAGCTTTAACTTTTCCACCAACACCCC
CACATGAAAAAAAAAAAAAAAAAAAAACAAAAAACAGCTCACAAGTAACATTACCAGCCA
CCAACTTTGAATGTGAGCTTCTCGCTTTGACCTTCGCTGTGGTCCCTGTAAATAGTAAAT
AACAGAGGGGTAATGGGGGAGAGGGGCTTGGGTGATGTGGTTTGGATCAGCATGCATTTA
TTTAGCATCATCAGGTGCCCAGCTTTTCGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               6-120, - strand, RNAz p=0.982634
               

               
               240-409, - strand, RNAz p=0.873641

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-120, - strand, RNAz p=0.982634
               

               
               240-409, - strand, RNAz p=0.873641

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               6-409, gnl|bosTau2|chr17 (33516418-33516818)
               

               
               6-409, gnl|canFam2|chr26 (17097208-17097861)
               

               
               6-409, gnl|hg17|chr12 (116456706-116457415)
               

               
               6-409, gnl|Hg17|chr12 (116457110-116456712)
               

               
               6-409, gnl|loxAfr1|scaffold_216506 (1165-503)
               

               
               6-409, gnl|mm7|chr5 (116917003-116916383)
               

               
               6-409, gnl|Mm7|chr5 (116916630-116916995)
               

               
               6-409, gnl|oryCun1|scaffold_197103 (13313-12648)
               

               
               6-409, gnl|panTro1|chr10 (119436007-119436716)
               

               
               6-409, gnl|rheMac2|chr11 (118506833-118507531)
               

               
               6-409, gnl|rn3|chr12 (39943254-39943860)
               


               
               431-806, gnl|bosTau2|chr17 (33516818-33517164)
               

               
               431-806, gnl|Hg17|chr12 (116456712-116456315)
               

               
               431-806, gnl|Mm7|chr5 (116916995-116917386)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-409, gnl|bosTau2|chr17 (33516418-33516818)
               

               
               6-409, gnl|canFam2|chr26 (17097208-17097861)
               

               
               6-409, gnl|hg17|chr12 (116456706-116457415)
               

               
               6-409, gnl|Hg17|chr12 (116457110-116456712)
               

               
               6-409, gnl|loxAfr1|scaffold_216506 (1165-503)
               

               
               6-409, gnl|mm7|chr5 (116917003-116916383)
               

               
               6-409, gnl|Mm7|chr5 (116916630-116916995)
               

               
               6-409, gnl|oryCun1|scaffold_197103 (13313-12648)
               

               
               6-409, gnl|panTro1|chr10 (119436007-119436716)
               

               
               6-409, gnl|rheMac2|chr11 (118506833-118507531)
               

               
               6-409, gnl|rn3|chr12 (39943254-39943860)
               


               
               431-806, gnl|bosTau2|chr17 (33516818-33517164)
               

               
               431-806, gnl|Hg17|chr12 (116456712-116456315)
               

               
               431-806, gnl|Mm7|chr5 (116916995-116917386)

	6-120, - strand, RNAz p=0.982634
	240-409, - strand, RNAz p=0.873641

	6-409, gnl\|bosTau2\|chr17 (33516418-33516818)
	6-409, gnl\|canFam2\|chr26 (17097208-17097861)
	6-409, gnl\|hg17\|chr12 (116456706-116457415)
	6-409, gnl\|Hg17\|chr12 (116457110-116456712)
	6-409, gnl\|loxAfr1\|scaffold_216506 (1165-503)
	6-409, gnl\|mm7\|chr5 (116917003-116916383)
	6-409, gnl\|Mm7\|chr5 (116916630-116916995)
	6-409, gnl\|oryCun1\|scaffold_197103 (13313-12648)
	6-409, gnl\|panTro1\|chr10 (119436007-119436716)
	6-409, gnl\|rheMac2\|chr11 (118506833-118507531)
	6-409, gnl\|rn3\|chr12 (39943254-39943860)

	431-806, gnl\|bosTau2\|chr17 (33516818-33517164)
	431-806, gnl\|Hg17\|chr12 (116456712-116456315)
	431-806, gnl\|Mm7\|chr5 (116916995-116917386)