Non-Coding RNA Search

Utr1-UTR010069D04

Sequence:


               
               TTTGAAATCCAAGAAATGATGTTACAGTTTTAACTGAGCATTAAACAAACAGGACACTGA
ATCTGGAGTGTTAAAGCTCGAAGGGGGAGTTGCAATTTTCTCGTTTCAAAAATGAGTAAC
AGGCACGACTTCCCAGCCAGCTGGGATCAGAGCTATTGACCCGATTCTCTGCTAGAGGCT
CCTGTCCTCAAGCGCGGTGCTCCAGAGAGGACAAGTCCAGGCTGTGGATGACAAGCCCCT
AGTTTAGAATGGGTGGGGCCTTATGACTCAAAATCAACTCCGGGCTTGGCGCTCCTGCCC
TGCAGCGTCCTCCGCGTGGCGGAGGTGTGGATGCTCCCACCTGTGCGTGCGCATGCGTGT
GAGTGCCCAGGCGGGCGCGTGCGTGCTTTGTGCGCATGCGTGCGTCCCCCGTGCGTGCGT
GCGTGCGTGCGTGCGTGCGTATGTGCGCGCCCGTGCACGTGCCAGCCAGGACACGCCAGC
CCAGCGCGAGGCAGACGTGGTTGCCTCAGAGGTTTGCAGCTCGGCCTCAGGACGCAGGGC
TTTTTTGGCTTCCCAGCCTACGCTCCCTGCTCTGTCAGGAGCCTGTTTGTGTTGGCCTCG
GACAAATGGCGGGCGTTTTACACGCGCAGGCTTAATGAAGGCCCTGGAGACTTCTACGGA
TGTTGAACCCAAACCCACGGGCCCCGTCAGTGGAAGTTAGCGCCTCTCGAGTAGGAGCGG
TGGTTGAGCTCCGACCCGGAACGCCTCCTTTTCTTTTAGTGCCGCCCGTGGCTCTCTTTT
GGTCTCCGCACTTACAGAAATAGATTTCACCTCTAAAATGAGCCCGTTTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAAATCCAAGAAATGATGTTACAGTTTTAACTGAGCATTAAACAAACAGGACACTGA
ATCTGGAGTGTTAAAGCTCGAAGGGGGAGTTGCAATTTTCTCGTTTCAAAAATGAGTAAC
AGGCACGACTTCCCAGCCAGCTGGGATCAGAGCTATTGACCCGATTCTCTGCTAGAGGCT
CCTGTCCTCAAGCGCGGTGCTCCAGAGAGGACAAGTCCAGGCTGTGGATGACAAGCCCCT
AGTTTAGAATGGGTGGGGCCTTATGACTCAAAATCAACTCCGGGCTTGGCGCTCCTGCCC
TGCAGCGTCCTCCGCGTGGCGGAGGTGTGGATGCTCCCACCTGTGCGTGCGCATGCGTGT
GAGTGCCCAGGCGGGCGCGTGCGTGCTTTGTGCGCATGCGTGCGTCCCCCGTGCGTGCGT
GCGTGCGTGCGTGCGTGCGTATGTGCGCGCCCGTGCACGTGCCAGCCAGGACACGCCAGC
CCAGCGCGAGGCAGACGTGGTTGCCTCAGAGGTTTGCAGCTCGGCCTCAGGACGCAGGGC
TTTTTTGGCTTCCCAGCCTACGCTCCCTGCTCTGTCAGGAGCCTGTTTGTGTTGGCCTCG
GACAAATGGCGGGCGTTTTACACGCGCAGGCTTAATGAAGGCCCTGGAGACTTCTACGGA
TGTTGAACCCAAACCCACGGGCCCCGTCAGTGGAAGTTAGCGCCTCTCGAGTAGGAGCGG
TGGTTGAGCTCCGACCCGGAACGCCTCCTTTTCTTTTAGTGCCGCCCGTGGCTCTCTTTT
GGTCTCCGCACTTACAGAAATAGATTTCACCTCTAAAATGAGCCCGTTTGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               729-832, - strand, RNAz p=0.639632

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               729-832, - strand, RNAz p=0.639632

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-254, gnl|bosTau2|chr1 (102567562-102567315)
               

               
               1-254, gnl|Hg17|chr21 (37209512-37209254)
               


               
               424-832, gnl|bosTau2|chr1 (102567190-102566757)
               

               
               424-832, gnl|Hg17|chr21 (37209195-37208823)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-254, gnl|bosTau2|chr1 (102567562-102567315)
               

               
               1-254, gnl|Hg17|chr21 (37209512-37209254)
               


               
               424-832, gnl|bosTau2|chr1 (102567190-102566757)
               

               
               424-832, gnl|Hg17|chr21 (37209195-37208823)

	1-254, gnl\|bosTau2\|chr1 (102567562-102567315)
	1-254, gnl\|Hg17\|chr21 (37209512-37209254)

	424-832, gnl\|bosTau2\|chr1 (102567190-102566757)
	424-832, gnl\|Hg17\|chr21 (37209195-37208823)