Non-Coding RNA Search

Utr1-UTR010075C09

Sequence:


               
               AATGAGTGTATCCTGAGGCTTAAAGTCCCTTGGATGTCAGATCTTCTGTCATCTTGGGCC
CGATTGGTTCTAACTAGCTTTGGTCACATCTTCAATGGCTATGTCATTCTTTGAAAGGTT
GTGCCCTGCCCCCTTCCTTCCTATGTTAGTATTTCAGCAGAGCTGGGAAAAAAGTTATTG
TGAGGCTCTGGGACTCTAGAGAGGCAGGTGGCCTTGCTCCTGTCCTCAAGGAGTTTATCT
CTTTATACGTGCACCCCCTTTACAGTCTAGAGAGTGCCTGTAAGCACTTGACCTTGTCTG
GTTATTCAAAGTCCAGGGAGTCAGCAGGCTGGCTGGCTGGCAGCACCCTTGCAGTGGCCC
CCAGAGGGTGCTGAGTGGTGGTGCTGAACCCTGGCCTCTCCACGCCTTGGCATTCTATTC
GTGACCTCCAGAAGGGGCTGTGATCCGCCCTGGGGGTGTGGCCTGGCCAGGTGGGGCCCT
GCGGAAGGGCAGTGGCTTTCAAGTCTTCCTAAAGCAGCCTCAGATTTCCAGCTTGCTCCA
GGGCTGAGCCAGACCAGGTGGGTCTCAATTTCCCTTGGACCCCTTAGGGAGGGTGCGGAG
AGACCCTCATTCTCTGGTGATGCTGCCCCCCCAGGGCGCTGGGAGGGATGGGGGTCTGGA
GTCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGAGTGTATCCTGAGGCTTAAAGTCCCTTGGATGTCAGATCTTCTGTCATCTTGGGCC
CGATTGGTTCTAACTAGCTTTGGTCACATCTTCAATGGCTATGTCATTCTTTGAAAGGTT
GTGCCCTGCCCCCTTCCTTCCTATGTTAGTATTTCAGCAGAGCTGGGAAAAAAGTTATTG
TGAGGCTCTGGGACTCTAGAGAGGCAGGTGGCCTTGCTCCTGTCCTCAAGGAGTTTATCT
CTTTATACGTGCACCCCCTTTACAGTCTAGAGAGTGCCTGTAAGCACTTGACCTTGTCTG
GTTATTCAAAGTCCAGGGAGTCAGCAGGCTGGCTGGCTGGCAGCACCCTTGCAGTGGCCC
CCAGAGGGTGCTGAGTGGTGGTGCTGAACCCTGGCCTCTCCACGCCTTGGCATTCTATTC
GTGACCTCCAGAAGGGGCTGTGATCCGCCCTGGGGGTGTGGCCTGGCCAGGTGGGGCCCT
GCGGAAGGGCAGTGGCTTTCAAGTCTTCCTAAAGCAGCCTCAGATTTCCAGCTTGCTCCA
GGGCTGAGCCAGACCAGGTGGGTCTCAATTTCCCTTGGACCCCTTAGGGAGGGTGCGGAG
AGACCCTCATTCTCTGGTGATGCTGCCCCCCCAGGGCGCTGGGAGGGATGGGGGTCTGGA
GTCAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               533-640, - strand, RNAz p=0.97812
               

               
               550-666, - strand, RNAz p=0.992733

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               533-640, - strand, RNAz p=0.97812
               

               
               550-666, - strand, RNAz p=0.992733

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-142, gnl|bosTau2|chr10 (411870-411729)
               


               
               338-666, gnl|bosTau2|chr3 (60600137-60599812)
               

               
               338-666, gnl|canFam2|chr5 (57548737-57548475)
               

               
               338-666, gnl|dasNov1|scaffold_11168 (2224-2493)
               

               
               338-666, gnl|hg17|chr1 (54742039-54742300)
               

               
               338-666, gnl|Hg17|chr1 (54742038-54742423)
               

               
               338-666, gnl|loxAfr1|scaffold_40694 (10425-10154)
               

               
               338-666, gnl|mm7|chr4 (106169042-106168833)
               

               
               338-666, gnl|panTro1|chr1 (53025173-53025434)
               

               
               338-666, gnl|rheMac2|chr1 (57437597-57437858)
               

               
               338-666, gnl|rn3|chr5 (127868003-127867794)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-142, gnl|bosTau2|chr10 (411870-411729)
               


               
               338-666, gnl|bosTau2|chr3 (60600137-60599812)
               

               
               338-666, gnl|canFam2|chr5 (57548737-57548475)
               

               
               338-666, gnl|dasNov1|scaffold_11168 (2224-2493)
               

               
               338-666, gnl|hg17|chr1 (54742039-54742300)
               

               
               338-666, gnl|Hg17|chr1 (54742038-54742423)
               

               
               338-666, gnl|loxAfr1|scaffold_40694 (10425-10154)
               

               
               338-666, gnl|mm7|chr4 (106169042-106168833)
               

               
               338-666, gnl|panTro1|chr1 (53025173-53025434)
               

               
               338-666, gnl|rheMac2|chr1 (57437597-57437858)
               

               
               338-666, gnl|rn3|chr5 (127868003-127867794)

	533-640, - strand, RNAz p=0.97812
	550-666, - strand, RNAz p=0.992733

	1-142, gnl\|bosTau2\|chr10 (411870-411729)

	338-666, gnl\|bosTau2\|chr3 (60600137-60599812)
	338-666, gnl\|canFam2\|chr5 (57548737-57548475)
	338-666, gnl\|dasNov1\|scaffold_11168 (2224-2493)
	338-666, gnl\|hg17\|chr1 (54742039-54742300)
	338-666, gnl\|Hg17\|chr1 (54742038-54742423)
	338-666, gnl\|loxAfr1\|scaffold_40694 (10425-10154)
	338-666, gnl\|mm7\|chr4 (106169042-106168833)
	338-666, gnl\|panTro1\|chr1 (53025173-53025434)
	338-666, gnl\|rheMac2\|chr1 (57437597-57437858)
	338-666, gnl\|rn3\|chr5 (127868003-127867794)