Non-Coding RNA Search

Utr1-UTR010080H01

Sequence:


               
               TTTTAAAAACTCAGTATTTGTTGGTTTCCTCCATCTAACCTCACCGCCTGCCAGACAATT
TATTTAGCTTCGTGGATTGATCCCTCCTCCTTGTTTAGTTAATTCAACAAAGACTTTTTG
CGATCTGTTTGGAGTTTGTCTGATGCCGTGGAAAAGTAGCTGATGATTTATTTGGTTGCT
TTTTGATTTCTGTCTTCAGTCCTTCTTTCTCTTCCTTTCAGCAGGGATGTCAGCTGTTAT
TACTTCCTATTGATCCCTTTGCAAAGTGAGAAGTGAACTAAAATTAATGTCAAGTCCACT
GCTGGGATCAATAGCTGGAGTTGTTTTAATCTGGATTTGCATGAAGTGCTAAATTAAAAA
AATCAGCATAGAAGCAGAAAAGCAACACTTTCCCTTTGCCCAGTTCTTTACATTCACCCA
AATGATCCATCAAGCTGATTATCTTACAATCCGTATTTTTTTAATTAAGAGGATTAGTTA
GTTTTCTTATTTTGGGTGCTGTGTTTAAACCCATGACATTTTGACATTGGGATTGTATTA
ACTATAGATTTTCATAATGACTGTGGTCTGCTGAAGCTTCTTCTATACAAGTTGTTAATG
TGAGGAGGGGGTAAGAAAGAAAAGGGAAAAGAAAAACAGCACTCCCCCCCCTCCACAGAG
ACCACCACTCACACAGGGGAGTAAAAGAGTTGTGGCCTGGGAAAATATTGCTGATTTCTT
TTCAGTATAATGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAAAACTCAGTATTTGTTGGTTTCCTCCATCTAACCTCACCGCCTGCCAGACAATT
TATTTAGCTTCGTGGATTGATCCCTCCTCCTTGTTTAGTTAATTCAACAAAGACTTTTTG
CGATCTGTTTGGAGTTTGTCTGATGCCGTGGAAAAGTAGCTGATGATTTATTTGGTTGCT
TTTTGATTTCTGTCTTCAGTCCTTCTTTCTCTTCCTTTCAGCAGGGATGTCAGCTGTTAT
TACTTCCTATTGATCCCTTTGCAAAGTGAGAAGTGAACTAAAATTAATGTCAAGTCCACT
GCTGGGATCAATAGCTGGAGTTGTTTTAATCTGGATTTGCATGAAGTGCTAAATTAAAAA
AATCAGCATAGAAGCAGAAAAGCAACACTTTCCCTTTGCCCAGTTCTTTACATTCACCCA
AATGATCCATCAAGCTGATTATCTTACAATCCGTATTTTTTTAATTAAGAGGATTAGTTA
GTTTTCTTATTTTGGGTGCTGTGTTTAAACCCATGACATTTTGACATTGGGATTGTATTA
ACTATAGATTTTCATAATGACTGTGGTCTGCTGAAGCTTCTTCTATACAAGTTGTTAATG
TGAGGAGGGGGTAAGAAAGAAAAGGGAAAAGAAAAACAGCACTCCCCCCCCTCCACAGAG
ACCACCACTCACACAGGGGAGTAAAAGAGTTGTGGCCTGGGAAAATATTGCTGATTTCTT
TTCAGTATAATGAAGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               200-510, - strand, RNAz p=0.939944
               

               
               551-660, - strand, RNAz p=0.662147

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-510, - strand, RNAz p=0.939944
               

               
               551-660, - strand, RNAz p=0.662147

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               247-314, + strand, RNAmicro p=0.910152
               

               
               586-712, - strand, RNAmicro p=0.902242

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               247-314, + strand, RNAmicro p=0.910152
               

               
               586-712, - strand, RNAmicro p=0.902242

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-736, gnl|bosTau2|chr3 (70786511-70787253)
               

               
               1-736, gnl|Hg17|chr1 (44544020-44544772)
               

               
               1-736, gnl|Mm7|chr4 (116869469-116868731)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-736, gnl|bosTau2|chr3 (70786511-70787253)
               

               
               1-736, gnl|Hg17|chr1 (44544020-44544772)
               

               
               1-736, gnl|Mm7|chr4 (116869469-116868731)

	200-510, - strand, RNAz p=0.939944
	551-660, - strand, RNAz p=0.662147

	247-314, + strand, RNAmicro p=0.910152
	586-712, - strand, RNAmicro p=0.902242

	1-736, gnl\|bosTau2\|chr3 (70786511-70787253)
	1-736, gnl\|Hg17\|chr1 (44544020-44544772)
	1-736, gnl\|Mm7\|chr4 (116869469-116868731)