Non-Coding RNA Search

Utr1-UTR01A050093

Sequence:


               
               GGAGGCCTGGATTTGCATCCTGGCCCAAGCACTTGCCAGCGTTGCTGTTTGCCAGCTATG
TGACTTTGCACAAGTTACCTCCTAGTTCTGAGGATCAGTTCTCCATCTGCAAAGTGGGCT
GGATAATAGGACCTCCCTCAGAGCTTTTGTGAGGATTTGAAGACTTTTCACAAAGGCTCA
GCACAACACCTGATACTAAGTAAGCATGTCAAATGTTATTTATTGGTATGCCTCTGATGA
TTTCTATTTATGGCATAAGCATCCTCTGAGCCCTGTATGCCAGGTGCTATGCCAGATGCG
GGGGAACAGAGATGTTTAAAATGAACCTCTGTGTCTCTAACAGCTTATAATCTTGTTGAA
GAGACAGAGTACTCTGTTTTTGTTTTTTGTTTTGGGTTTTTTTGTTGTTGTTTGGTTGGT
TGGTTGGGTTTTGTTTTGTTAGGACTACGCCTATGGANTAATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCCTGGATTTGCATCCTGGCCCAAGCACTTGCCAGCGTTGCTGTTTGCCAGCTATG
TGACTTTGCACAAGTTACCTCCTAGTTCTGAGGATCAGTTCTCCATCTGCAAAGTGGGCT
GGATAATAGGACCTCCCTCAGAGCTTTTGTGAGGATTTGAAGACTTTTCACAAAGGCTCA
GCACAACACCTGATACTAAGTAAGCATGTCAAATGTTATTTATTGGTATGCCTCTGATGA
TTTCTATTTATGGCATAAGCATCCTCTGAGCCCTGTATGCCAGGTGCTATGCCAGATGCG
GGGGAACAGAGATGTTTAAAATGAACCTCTGTGTCTCTAACAGCTTATAATCTTGTTGAA
GAGACAGAGTACTCTGTTTTTGTTTTTTGTTTTGGGTTTTTTTGTTGTTGTTTGGTTGGT
TGGTTGGGTTTTGTTTTGTTAGGACTACGCCTATGGANTAATGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-296, + strand, RNAz p=0.845188

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-296, + strand, RNAz p=0.845188

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               43-379, gnl|bosTau2|chr22 (11937876-11937539)
               

               
               43-379, gnl|canFam2|chr20 (11458493-11457993)
               

               
               43-379, gnl|hg17|chr3 (9806936-9807414)
               

               
               43-379, gnl|Hg17|chr3 (9807541-9807182)
               

               
               43-379, gnl|loxAfr1|scaffold_116481 (3991-4475)
               

               
               43-379, gnl|panTro1|chr2 (10186851-10187329)
               

               
               43-379, gnl|rheMac2|chr2 (51205191-51204714)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-379, gnl|bosTau2|chr22 (11937876-11937539)
               

               
               43-379, gnl|canFam2|chr20 (11458493-11457993)
               

               
               43-379, gnl|hg17|chr3 (9806936-9807414)
               

               
               43-379, gnl|Hg17|chr3 (9807541-9807182)
               

               
               43-379, gnl|loxAfr1|scaffold_116481 (3991-4475)
               

               
               43-379, gnl|panTro1|chr2 (10186851-10187329)
               

               
               43-379, gnl|rheMac2|chr2 (51205191-51204714)

	43-379, gnl\|bosTau2\|chr22 (11937876-11937539)
	43-379, gnl\|canFam2\|chr20 (11458493-11457993)
	43-379, gnl\|hg17\|chr3 (9806936-9807414)
	43-379, gnl\|Hg17\|chr3 (9807541-9807182)
	43-379, gnl\|loxAfr1\|scaffold_116481 (3991-4475)
	43-379, gnl\|panTro1\|chr2 (10186851-10187329)
	43-379, gnl\|rheMac2\|chr2 (51205191-51204714)