Non-Coding RNA Search

Utr1-UTR01A060093

Sequence:


               
               TGGCCTTTCACCACCGGGATTTGTTCCCGATGAATCATCAGCATTTGACCGAGAAGCCAA
CTCAGCATCTTTTGAAAAGAAGAAGAAAAAAAATCCACTCCACTCCCTTGTAGCCCCAAA
TGCTGTGAGTCAGTCTTTTGGCGCCTGGAGTGGAAAGCAGTGAAAAATGGGTAGACCTTT
CGGGATCTGCCAGGAAAGGAGAACTCTGGGAACAGGCTGGCTTGAGGGAGGGGGGAGGGG
GCTGCCCAGTGAGGGCAGTGGCCCCTCACGTATTTGCATGTTCATTTTCTGGCCTCCTTA
GTTCTGTACCCCACCCCACCCCCACCCCACCCCAGGAGGATCAGCTGGCGTCTGTGATTA
GCCTCAGGTCTCCTGGCTTATGGGCTGTGTTATGCGGCTTTTAAGTGTTGTTGGACAGCC
ACTTGGTATTTCGTTTACAGCCCTTGAACTGCTGCCTTTTCGTGGGTGAGGCCTGTCCTC
CAGCTGGACCACAGTCCTCCAGATGGAGACACAGCACCCCCCACCCCAACTCCTTTTGGT
AGCCCCAGTGCTGAGCAGAGATGGGCACTGGCCACAGCTTGGGAAGCTGCTAAACTCTGG
AGGACTCAGATCCCCCATTTTTAAAAGCAAACAGATGTAACTGCCATTCAAGTAAGATAG
TATTAGAAGGCTTAGATCAGACAGTATGGGTAAAAAAGCCTTTAGCACTATGCTGggagt
tcccgtcgtggctcagtggttaacgaatccgactgggaaccatgaggt

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTTTCACCACCGGGATTTGTTCCCGATGAATCATCAGCATTTGACCGAGAAGCCAA
CTCAGCATCTTTTGAAAAGAAGAAGAAAAAAAATCCACTCCACTCCCTTGTAGCCCCAAA
TGCTGTGAGTCAGTCTTTTGGCGCCTGGAGTGGAAAGCAGTGAAAAATGGGTAGACCTTT
CGGGATCTGCCAGGAAAGGAGAACTCTGGGAACAGGCTGGCTTGAGGGAGGGGGGAGGGG
GCTGCCCAGTGAGGGCAGTGGCCCCTCACGTATTTGCATGTTCATTTTCTGGCCTCCTTA
GTTCTGTACCCCACCCCACCCCCACCCCACCCCAGGAGGATCAGCTGGCGTCTGTGATTA
GCCTCAGGTCTCCTGGCTTATGGGCTGTGTTATGCGGCTTTTAAGTGTTGTTGGACAGCC
ACTTGGTATTTCGTTTACAGCCCTTGAACTGCTGCCTTTTCGTGGGTGAGGCCTGTCCTC
CAGCTGGACCACAGTCCTCCAGATGGAGACACAGCACCCCCCACCCCAACTCCTTTTGGT
AGCCCCAGTGCTGAGCAGAGATGGGCACTGGCCACAGCTTGGGAAGCTGCTAAACTCTGG
AGGACTCAGATCCCCCATTTTTAAAAGCAAACAGATGTAACTGCCATTCAAGTAAGATAG
TATTAGAAGGCTTAGATCAGACAGTATGGGTAAAAAAGCCTTTAGCACTATGCTGggagt
tcccgtcgtggctcagtggttaacgaatccgactgggaaccatgaggt

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               358-474, - strand, RNAz p=0.998321

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-474, - strand, RNAz p=0.998321

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               2-228, gnl|bosTau2|chr12 (13150534-13150756)
               

               
               2-228, gnl|canFam2|chr25 (7576148-7575576)
               

               
               2-228, gnl|dasNov1|scaffold_46054 (6463-5897)
               

               
               2-228, gnl|hg17|chr13 (35451536-35452117)
               

               
               2-228, gnl|Hg17|chr13 (35451822-35451600)
               

               
               2-228, gnl|loxAfr1|scaffold_95689 (1526-2060)
               

               
               2-228, gnl|mm7|chr3 (55483699-55483190)
               

               
               2-228, gnl|Mm7|chr3 (55483482-55483676)
               

               
               2-228, gnl|monDom2|scaffold_15 (47528305-47528969)
               

               
               2-228, gnl|oryCun1|scaffold_205058 (402516-403085)
               

               
               2-228, gnl|panTro1|chr14 (34645089-34645670)
               

               
               2-228, gnl|rheMac2|chr17 (15262695-15263276)
               

               
               2-228, gnl|rn3|chr2 (144521687-144521163)
               


               
               358-694, gnl|bosTau2|chr12 (13151132-13151475)
               

               
               358-694, gnl|Hg17|chr13 (35451426-35451106)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-228, gnl|bosTau2|chr12 (13150534-13150756)
               

               
               2-228, gnl|canFam2|chr25 (7576148-7575576)
               

               
               2-228, gnl|dasNov1|scaffold_46054 (6463-5897)
               

               
               2-228, gnl|hg17|chr13 (35451536-35452117)
               

               
               2-228, gnl|Hg17|chr13 (35451822-35451600)
               

               
               2-228, gnl|loxAfr1|scaffold_95689 (1526-2060)
               

               
               2-228, gnl|mm7|chr3 (55483699-55483190)
               

               
               2-228, gnl|Mm7|chr3 (55483482-55483676)
               

               
               2-228, gnl|monDom2|scaffold_15 (47528305-47528969)
               

               
               2-228, gnl|oryCun1|scaffold_205058 (402516-403085)
               

               
               2-228, gnl|panTro1|chr14 (34645089-34645670)
               

               
               2-228, gnl|rheMac2|chr17 (15262695-15263276)
               

               
               2-228, gnl|rn3|chr2 (144521687-144521163)
               


               
               358-694, gnl|bosTau2|chr12 (13151132-13151475)
               

               
               358-694, gnl|Hg17|chr13 (35451426-35451106)

	2-228, gnl\|bosTau2\|chr12 (13150534-13150756)
	2-228, gnl\|canFam2\|chr25 (7576148-7575576)
	2-228, gnl\|dasNov1\|scaffold_46054 (6463-5897)
	2-228, gnl\|hg17\|chr13 (35451536-35452117)
	2-228, gnl\|Hg17\|chr13 (35451822-35451600)
	2-228, gnl\|loxAfr1\|scaffold_95689 (1526-2060)
	2-228, gnl\|mm7\|chr3 (55483699-55483190)
	2-228, gnl\|Mm7\|chr3 (55483482-55483676)
	2-228, gnl\|monDom2\|scaffold_15 (47528305-47528969)
	2-228, gnl\|oryCun1\|scaffold_205058 (402516-403085)
	2-228, gnl\|panTro1\|chr14 (34645089-34645670)
	2-228, gnl\|rheMac2\|chr17 (15262695-15263276)
	2-228, gnl\|rn3\|chr2 (144521687-144521163)

	358-694, gnl\|bosTau2\|chr12 (13151132-13151475)
	358-694, gnl\|Hg17\|chr13 (35451426-35451106)