Non-Coding RNA Search

Utr1-UTR01A090087

Sequence:


               
               GGTGTCACAGATGCCTGGGCAACAGAATTCCAATAAAATGCAGGGCAGGATGGGCGGAGA
AGTTAGATAAAGGCTAAAGTTACTTCCAGAAATAACAGAATATAGAAGCTCTGGGAGAGA
GAGTTTGGGTCTCTGGGCTTGCCCATCCAGGACTTCTCAGCAGCTATAAAAGGACTTAAA
TTTCATCTTTCAAAATAAAACTTGCCCATACTCTGCCAGTTTTGTCTGGGCAGGAAACAG
AGCTCAGACCGGCTGCTAAGGATGGTTCGAAATTCCACTTCAGAGTCCTGGAATGTGACA
CCTCCCAAGCACCAAGCCCCAGCCTGGCTTCTGTTCTGGGAGTGAGCAAAGCTGCCTCCT
GGAGCTGAGAGTGGGGGGTGGGGGGAGCAGCAGGGGGCACAGAGCCCTCCAGCCTCCCTC
TTGCAGGTGCTCACAGCATCTCCCATCTGAGAAGGACAAGTCACATCCCTGGCCCTATAT
CTCCACATCTCTCCCCTCATCGGGATGGCCTCTTTGGTATTTAGAACGAGCACGTTGCCA
TGAGAGCCCAAGGTCAAGGACCAGAGCTGCCCCTGGTGGGAGCACCTCTTCCCTTGAGCA
CTTTCTGAAAGTGCTCCAAAGACAGCCTCACTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTCACAGATGCCTGGGCAACAGAATTCCAATAAAATGCAGGGCAGGATGGGCGGAGA
AGTTAGATAAAGGCTAAAGTTACTTCCAGAAATAACAGAATATAGAAGCTCTGGGAGAGA
GAGTTTGGGTCTCTGGGCTTGCCCATCCAGGACTTCTCAGCAGCTATAAAAGGACTTAAA
TTTCATCTTTCAAAATAAAACTTGCCCATACTCTGCCAGTTTTGTCTGGGCAGGAAACAG
AGCTCAGACCGGCTGCTAAGGATGGTTCGAAATTCCACTTCAGAGTCCTGGAATGTGACA
CCTCCCAAGCACCAAGCCCCAGCCTGGCTTCTGTTCTGGGAGTGAGCAAAGCTGCCTCCT
GGAGCTGAGAGTGGGGGGTGGGGGGAGCAGCAGGGGGCACAGAGCCCTCCAGCCTCCCTC
TTGCAGGTGCTCACAGCATCTCCCATCTGAGAAGGACAAGTCACATCCCTGGCCCTATAT
CTCCACATCTCTCCCCTCATCGGGATGGCCTCTTTGGTATTTAGAACGAGCACGTTGCCA
TGAGAGCCCAAGGTCAAGGACCAGAGCTGCCCCTGGTGGGAGCACCTCTTCCCTTGAGCA
CTTTCTGAAAGTGCTCCAAAGACAGCCTCACTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               46-264, + strand, RNAz p=0.940632

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-264, + strand, RNAz p=0.940632

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               177-269, - strand, RNAmicro p=0.914338

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               177-269, - strand, RNAmicro p=0.914338

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-634, gnl|bosTau2|chr11 (49192121-49191494)
               

               
               6-634, gnl|Hg17|chr2 (69282656-69283263)
               

               
               6-634, gnl|Mm7|chr6 (87300910-87300324)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-634, gnl|bosTau2|chr11 (49192121-49191494)
               

               
               6-634, gnl|Hg17|chr2 (69282656-69283263)
               

               
               6-634, gnl|Mm7|chr6 (87300910-87300324)

	6-634, gnl\|bosTau2\|chr11 (49192121-49191494)
	6-634, gnl\|Hg17\|chr2 (69282656-69283263)
	6-634, gnl\|Mm7\|chr6 (87300910-87300324)